Factsheet for PGSC0003DMT400066394

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011487	nucleus
PGSC0003DMT400021687
PGSC0003DMT400031329	nucleus
PGSC0003DMT400037827	nucleus
PGSC0003DMT400039033	nucleus
PGSC0003DMT400040287	endoplasmic reticulum
PGSC0003DMT400041637	nucleus
PGSC0003DMT400049672
PGSC0003DMT400051898
PGSC0003DMT400057203
PGSC0003DMT400064307	nucleus
PGSC0003DMT400066557	nucleus
PGSC0003DMT400068627	nucleus
PGSC0003DMT400068629	nucleus
PGSC0003DMT400077428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19150.1	PGSC0003DMT400040287	AT1G70210.1	20407024
AT3G19150.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT3G19150.1	PGSC0003DMT400077428	AT3G48750.1	11449057
AT3G19150.1	PGSC0003DMT400011487	AT3G50070.1	20407024
AT3G19150.1	PGSC0003DMT400031329	AT3G50070.1	20407024
AT3G19150.1	PGSC0003DMT400064307	AT3G50070.1	20407024
AT3G19150.1	PGSC0003DMT400068627	AT3G50070.1	20407024
AT3G19150.1	PGSC0003DMT400068629	AT3G50070.1	20407024
AT3G19150.1	PGSC0003DMT400049672	AT3G54650.1	18948957
AT3G19150.1	PGSC0003DMT400051898	AT3G54650.1	18948957
AT3G19150.1	PGSC0003DMT400039033	AT4G03270.1	20407024
AT3G19150.1	PGSC0003DMT400066557	AT4G34160.1	20407024
AT3G19150.1	PGSC0003DMT400037827	AT5G10440.1	20407024
AT3G19150.1	PGSC0003DMT400041637	AT5G10440.1	20407024
AT3G19150.1	PGSC0003DMT400057203	AT5G54900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108610.2.1	Tomato	nucleus	76.56	67.43
GSMUA_Achr10P...	Banana	cytosol	14.58	48.28
GSMUA_Achr9P27040_001	Banana	cytosol, mitochondrion, nucleus	14.58	47.46
TraesCS5A01G240600.1	Wheat	plastid	17.71	38.2
TraesCS5B01G238600.1	Wheat	plastid	22.92	34.65
EER99015	Sorghum	plastid	15.1	34.12
KRH71159	Soybean	nucleus, plastid	31.25	34.09
KRH50258	Soybean	nucleus, plastid	32.29	33.16
CDY22987	Canola	nucleus	28.65	28.65
Bra018812.1-P	Field mustard	nucleus	24.48	28.48
CDX92305	Canola	nucleus	26.04	28.41
CDX99264	Canola	nucleus	26.04	28.41
CDY50958	Canola	nucleus	24.48	28.31
CDX82309	Canola	nucleus	28.12	28.27
Bra001736.1-P	Field mustard	nucleus	26.04	28.25
AT3G19150.1	Thale cress	nucleus	28.65	28.06
CDY28100	Canola	nucleus	26.56	27.57
AT1G49620.3	Thale cress	nucleus	28.65	27.5
VIT_03s0063g00670.t01	Wine grape	nucleus	30.21	26.48
TraesCS5D01G247100.1	Wheat	plastid	17.71	25.95
Bra022391.1-P	Field mustard	nucleus	17.19	22.76
PGSC0003DMT400040785	Potato	nucleus	25.0	22.12
HORVU5Hr1G068770.6	Barley	nucleus	17.71	21.79
GSMUA_Achr2P22370_001	Banana	nucleus	20.31	18.75
GSMUA_Achr10P...	Banana	nucleus, plastid	19.27	16.67

Protein Annotations

MapMan:13.1.1.3.1	Gene3D:4.10.365.10	InterPro:CDI	GO:GO:0003674	GO:GO:0004860	GO:GO:0004861
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006469
GO:GO:0007049	GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0030234	GO:GO:0071901	UniProt:M1CFI0	PFAM:PF02234	EnsemblPlantsGene:PGSC0003DMG400025821	PGSC:PGSC0003DMG400025821
EnsemblPlants:PGSC0003DMT400066394	PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF39	UniParc:UPI0002962F65	SEG:seg

Description

Cyclin-dependent kinase inhibitor 7 [Source:PGSC_GENE;Acc:PGSC0003DMG400025821]

Coordinates

chr1:+:84967732..84968811

Molecular Weight (calculated)

21218.6 Da

IEP (calculated)

4.962

GRAVY (calculated)

-0.640

Length

192 amino acids

Sequence
(BLAST)

001: MKVTEIGNGG LRIRDNNVEE EVMSNCSMSS STKRRKFGSV TDVDFSENSA SPATSVTSVH IPTISQCSSC YESGEVTMKS ILKSLDLKLI SQFSFWSSEN
101: FKPIDLPNPP SEHCGDSEDM ESSSTTTKKS SSSASALRKQ PSASKVPPEA EIEEFFSAAE KCEQKRFAEK YNYDIVKDAP LEGRYQWVSL KP

Best Arabidopsis Sequence Match ( AT1G49620.3 )
(BLAST)

001: MSLREMSETK PKRDSEYEGS NIKRMRLDDD DDVLRSPTRT LSSSSSSSLA YSVSDSGGFC SVALSEEEDD HLSSSISSGC SSSETNEIAT RLPFSDLEAH
101: EISETEISTL LTNNFRKQGI SSSENLGETA EMDSATTEMR DQRKTEKKKK MEKSPTQAEL DDFFSAAERY EQKRFTEKYN YDIVNDTPLE GRYQWVSLKP

Arabidopsis Description

KRP7Cyclin-dependent kinase inhibitor family protein [Source:TAIR;Acc:AT1G49620]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.