Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX68497 | |
| CDX68573 | nucleus |
| CDX69832 | nucleus |
| CDX72453 | nucleus |
| CDX72643 | nucleus |
| CDX73462 | |
| CDX75405 | nucleus |
| CDX76265 | nucleus |
| CDX78253 | |
| CDX83047 | |
| CDX83112 | nucleus |
| CDX87018 | |
| CDX90892 | nucleus |
| CDX96319 | |
| CDX97009 | nucleus |
| CDY02095 | nucleus |
| CDY03686 | |
| CDY03687 | |
| CDY05870 | |
| CDY11608 | endoplasmic reticulum |
| CDY17286 | |
| CDY19874 | |
| CDY21951 | nucleus |
| CDY22116 | nucleus |
| CDY23022 | nucleus |
| CDY29570 | nucleus |
| CDY37936 | |
| CDY37939 | |
| CDY38800 | endoplasmic reticulum |
| CDY49278 | nucleus |
| CDY55831 | |
| CDY57741 | nucleus |
| CDY59943 | endoplasmic reticulum |
| CDY64339 | |
| CDY66197 | |
| CDY66787 | |
| CDY67142 | endoplasmic reticulum |
| CDY67496 | |
| CDY69708 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99264 | Canola | nucleus | 95.45 | 95.45 |
| Bra022391.1-P | Field mustard | nucleus | 56.82 | 68.97 |
| CDY22987 | Canola | nucleus | 48.3 | 44.27 |
| CDX82309 | Canola | nucleus | 46.02 | 42.41 |
| AT3G19150.1 | Thale cress | nucleus | 46.59 | 41.84 |
| TraesCS5A01G240600.1 | Wheat | plastid | 19.32 | 38.2 |
| GSMUA_Achr10P... | Banana | cytosol | 12.5 | 37.93 |
| GSMUA_Achr9P27040_001 | Banana | cytosol, mitochondrion, nucleus | 11.36 | 33.9 |
| EER99015 | Sorghum | plastid | 15.91 | 32.94 |
| CDY28100 | Canola | nucleus | 32.39 | 30.81 |
| CDY50958 | Canola | nucleus | 26.7 | 28.31 |
| KRH71159 | Soybean | nucleus, plastid | 27.84 | 27.84 |
| TraesCS5D01G247100.1 | Wheat | plastid | 19.89 | 26.72 |
| KRH50258 | Soybean | nucleus, plastid | 27.84 | 26.2 |
| PGSC0003DMT400066394 | Potato | nucleus | 28.41 | 26.04 |
| KRH76992 | Soybean | nucleus, plastid | 28.98 | 25.76 |
| KRH28480 | Soybean | plastid | 29.55 | 25.37 |
| VIT_07s0031g00800.t01 | Wine grape | plastid | 29.55 | 24.53 |
| TraesCS5B01G238600.1 | Wheat | plastid | 17.05 | 23.62 |
| KRH04631 | Soybean | plastid | 22.16 | 23.21 |
| KRH57804 | Soybean | plastid | 23.86 | 22.83 |
| Solyc01g108610.2.1 | Tomato | nucleus | 27.27 | 22.02 |
| VIT_03s0063g00670.t01 | Wine grape | nucleus | 27.27 | 21.92 |
| HORVU5Hr1G068770.6 | Barley | nucleus | 18.75 | 21.15 |
| GSMUA_Achr2P22370_001 | Banana | nucleus | 21.02 | 17.79 |
| PGSC0003DMT400040785 | Potato | nucleus | 21.59 | 17.51 |
| Solyc02g090680.2.1 | Tomato | nucleus | 21.02 | 17.45 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 18.18 | 14.41 |
Protein Annotations
| MapMan:13.1.1.3.1 | Gene3D:4.10.365.10 | GO:A0A078DSL4 | InterPro:CDI | EnsemblPlants:CDX92305 | ProteinID:CDX92305 |
| ProteinID:CDX92305.1 | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030234 |
| EnsemblPlantsGene:GSBRNA2T00154032001 | PFAM:PF02234 | PIRSF:PIRSF017811 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF23 | UniParc:UPI0004EF2944 |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g21020D
Coordinates
chrLK031871:-:1384227..1385034
Molecular Weight (calculated)
19257.0 Da
IEP (calculated)
4.351
GRAVY (calculated)
-0.910
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MSERNLNSKR ESRELEASST SVSPLQKKKK LDDSSADSNA VVLAIPSPSV ASSQGRCSVT SDDDDKSSIV SSGCFSSESN ETVRNNPTSG ADLEDTASEA
101: LGETTETEME SSSPALKRDN KPPEVSKIPT AEEIEAFLSE LEGGEDKQKR FIEKYNFDIV NDKPLQGRYM WDRLKP
101: LGETTETEME SSSPALKRDN KPPEVSKIPT AEEIEAFLSE LEGGEDKQKR FIEKYNFDIV NDKPLQGRYM WDRLKP
001: MSERKRELAE EASSTSFSPL KKTKLNDSSD SSPDSHDVIV FAVSSSSVAS SAALASDECS VTIGGEESDQ SSSISSGCFT SESKEIAKNS SSFGVDLEDH
101: QIETETETST FITSNFRKET SPVSEGLGET TTEMESSSAT KRKQPGVRKT PTAAEIEDLF SELESQDDKK KQFIEKYNFD IVNDEPLEGR YKWDRL
101: QIETETETST FITSNFRKET SPVSEGLGET TTEMESSSAT KRKQPGVRKT PTAAEIEDLF SELESQDDKK KQFIEKYNFD IVNDEPLEGR YKWDRL
Arabidopsis Description
KRP6At3g19150 [Source:UniProtKB/TrEMBL;Acc:A6QRA0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.