Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76265 | Canola | nucleus | 97.53 | 97.53 |
| Bra034612.1-P | Field mustard | nucleus | 97.53 | 96.74 |
| CDX72453 | Canola | nucleus | 83.84 | 85.0 |
| CDY49278 | Canola | nucleus | 85.75 | 84.82 |
| CDY69708 | Canola | nucleus | 86.3 | 84.22 |
| CDX75405 | Canola | nucleus | 85.75 | 83.91 |
| AT4G34160.1 | Thale cress | nucleus | 85.48 | 82.98 |
| VIT_07s0129g01100.t01 | Wine grape | nucleus | 46.85 | 55.34 |
| PGSC0003DMT400066557 | Potato | nucleus | 51.78 | 52.79 |
| VIT_03s0180g00040.t01 | Wine grape | nucleus | 54.25 | 51.3 |
| KRG90996 | Soybean | nucleus | 55.07 | 51.15 |
| Solyc01g107730.2.1 | Tomato | nucleus | 50.96 | 51.1 |
| KRH35760 | Soybean | nucleus | 54.25 | 49.25 |
| CDY01425 | Canola | nucleus | 43.56 | 44.92 |
| CDY02095 | Canola | nucleus | 40.0 | 44.51 |
| CDY12825 | Canola | nucleus | 43.29 | 44.13 |
| CDX68573 | Canola | nucleus | 41.92 | 43.47 |
| CDY23022 | Canola | nucleus | 39.18 | 43.47 |
| CDY30607 | Canola | nucleus | 41.64 | 43.06 |
| CDX83112 | Canola | nucleus | 41.37 | 42.9 |
| CDY17742 | Canola | nucleus | 41.37 | 42.54 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 18.36 | 38.95 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 35.34 | 33.25 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 30.96 | 32.75 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 35.89 | 32.19 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 31.78 | 32.04 |
| CDY11608 | Canola | nucleus | 27.67 | 31.86 |
| CDY13755 | Canola | nucleus | 25.48 | 31.85 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 30.41 | 31.62 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 30.14 | 31.07 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 30.14 | 31.07 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 30.14 | 31.07 |
| CDY38800 | Canola | nucleus | 27.12 | 31.03 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.85 | 30.91 |
| CDX81286 | Canola | nucleus | 22.19 | 30.45 |
| CDY67142 | Canola | nucleus | 28.22 | 30.38 |
| CDY54717 | Canola | nucleus | 21.92 | 30.08 |
| Os09t0111100-01 | Rice | cytosol | 29.86 | 29.95 |
| CDY59943 | Canola | nucleus | 28.77 | 29.09 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 32.33 | 28.99 |
| CDY08795 | Canola | nucleus | 24.11 | 28.57 |
| EER96424 | Sorghum | cytosol | 29.59 | 28.27 |
| CDY14561 | Canola | cytosol | 24.93 | 28.0 |
| CDX76917 | Canola | nucleus | 27.12 | 27.97 |
| Zm00001d019696_P001 | Maize | cytosol | 29.59 | 27.91 |
| CDX89480 | Canola | nucleus | 27.12 | 27.89 |
| CDY37828 | Canola | nucleus | 23.56 | 27.83 |
| Zm00001d005293_P001 | Maize | cytosol | 29.59 | 27.62 |
| CDY33959 | Canola | nucleus | 23.01 | 27.54 |
| CDY25602 | Canola | nucleus | 26.85 | 27.53 |
| CDY29570 | Canola | nucleus | 24.11 | 26.35 |
| CDX72643 | Canola | nucleus | 23.56 | 25.29 |
| CDX97009 | Canola | nucleus | 20.27 | 25.26 |
| CDX69832 | Canola | nucleus | 20.27 | 24.92 |
| CDY21951 | Canola | nucleus | 18.63 | 22.52 |
| CDY22116 | Canola | nucleus | 18.36 | 22.48 |
| CDX90892 | Canola | nucleus | 8.77 | 21.05 |
| CDY55121 | Canola | cytosol | 19.73 | 20.99 |
| CDY40332 | Canola | cytosol | 19.45 | 20.88 |
| CDY10467 | Canola | cytosol | 19.18 | 20.65 |
| CDX80803 | Canola | cytosol | 19.18 | 15.52 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078J507 | UniProt:A0A078J507 | EnsemblPlants:CDY57741 | ProteinID:CDY57741 |
| ProteinID:CDY57741.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00022591001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF351 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EF13DA | SEG:seg | : | : | : |
Description
BnaC03g77070DBnaC03g77070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J507]
Coordinates
chrLK033600:-:45385..47316
Molecular Weight (calculated)
41841.8 Da
IEP (calculated)
4.783
GRAVY (calculated)
-0.276
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPKEEESR EEHSTSFLLD ALYCEEEKWD DEEVVEENSS YSSSSSTTSP FVLLEQDLYW EDEDLVTLFT KEEEQGLSCL DDVYLATDRK EAVGWILRVN
101: AHYGFSTLAA VLAITYLDKF ICSYSLQRDK PWMLQLVSVA CLSLAAKVEE THVPLLLDFQ VEETKYVFEA KTIQRMELLI LSTLQWKMHL VTPLSFLDHI
201: IRRLGLKNNA HWDFLNRCHR LLLTVISDSR FVGYRPSVVA AATMMRVIYQ VEPFDPLSHQ TKLLNVLNIT KEKVEPCYNL ILQDRIGLQI ETQTSRKRKS
301: RDSPSLISPS CVIDSNPFNG DESSNDSWLT SSYTPPSSPE QEPPVKKTKK EKPILHLPWA IVASP
101: AHYGFSTLAA VLAITYLDKF ICSYSLQRDK PWMLQLVSVA CLSLAAKVEE THVPLLLDFQ VEETKYVFEA KTIQRMELLI LSTLQWKMHL VTPLSFLDHI
201: IRRLGLKNNA HWDFLNRCHR LLLTVISDSR FVGYRPSVVA AATMMRVIYQ VEPFDPLSHQ TKLLNVLNIT KEKVEPCYNL ILQDRIGLQI ETQTSRKRKS
301: RDSPSLISPS CVIDSNPFNG DESSNDSWLT SSYTPPSSPE QEPPVKKTKK EKPILHLPWA IVASP
001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
Arabidopsis Description
CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.