Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX68497 | |
| CDX68573 | nucleus |
| CDX69832 | nucleus |
| CDX72453 | nucleus |
| CDX72643 | nucleus |
| CDX73462 | |
| CDX75405 | nucleus |
| CDX76265 | nucleus |
| CDX78253 | |
| CDX83047 | |
| CDX83112 | nucleus |
| CDX87018 | |
| CDX90892 | nucleus |
| CDX96319 | |
| CDX97009 | nucleus |
| CDY02095 | nucleus |
| CDY03686 | |
| CDY03687 | |
| CDY05870 | |
| CDY11608 | endoplasmic reticulum |
| CDY17286 | |
| CDY19874 | |
| CDY21951 | nucleus |
| CDY22116 | nucleus |
| CDY23022 | nucleus |
| CDY29570 | nucleus |
| CDY37936 | |
| CDY37939 | |
| CDY38800 | endoplasmic reticulum |
| CDY49278 | nucleus |
| CDY55831 | |
| CDY57741 | nucleus |
| CDY59943 | endoplasmic reticulum |
| CDY64339 | |
| CDY66197 | |
| CDY66787 | |
| CDY67142 | endoplasmic reticulum |
| CDY67496 | |
| CDY69708 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92305 | Canola | nucleus | 95.45 | 95.45 |
| Bra022391.1-P | Field mustard | nucleus | 56.25 | 68.28 |
| AT3G19150.1 | Thale cress | nucleus | 47.73 | 42.86 |
| CDY22987 | Canola | nucleus | 46.02 | 42.19 |
| CDX82309 | Canola | nucleus | 44.89 | 41.36 |
| TraesCS5A01G240600.1 | Wheat | plastid | 19.32 | 38.2 |
| GSMUA_Achr10P... | Banana | cytosol | 11.93 | 36.21 |
| EER99015 | Sorghum | plastid | 16.48 | 34.12 |
| GSMUA_Achr9P27040_001 | Banana | cytosol, mitochondrion, nucleus | 10.8 | 32.2 |
| CDY28100 | Canola | nucleus | 32.39 | 30.81 |
| KRH71159 | Soybean | nucleus, plastid | 28.41 | 28.41 |
| CDY50958 | Canola | nucleus | 26.14 | 27.71 |
| TraesCS5D01G247100.1 | Wheat | plastid | 19.89 | 26.72 |
| PGSC0003DMT400066394 | Potato | nucleus | 28.41 | 26.04 |
| KRH76992 | Soybean | nucleus, plastid | 28.98 | 25.76 |
| KRH50258 | Soybean | nucleus, plastid | 27.27 | 25.67 |
| KRH28480 | Soybean | plastid | 29.55 | 25.37 |
| VIT_07s0031g00800.t01 | Wine grape | plastid | 28.98 | 24.06 |
| TraesCS5B01G238600.1 | Wheat | plastid | 17.05 | 23.62 |
| KRH04631 | Soybean | plastid | 22.16 | 23.21 |
| KRH57804 | Soybean | plastid | 23.86 | 22.83 |
| Solyc01g108610.2.1 | Tomato | nucleus | 27.27 | 22.02 |
| HORVU5Hr1G068770.6 | Barley | nucleus | 18.75 | 21.15 |
| VIT_03s0063g00670.t01 | Wine grape | nucleus | 26.14 | 21.0 |
| Solyc02g090680.2.1 | Tomato | nucleus | 22.16 | 18.4 |
| PGSC0003DMT400040785 | Potato | nucleus | 22.16 | 17.97 |
| GSMUA_Achr2P22370_001 | Banana | nucleus | 20.45 | 17.31 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 18.18 | 14.41 |
Protein Annotations
| MapMan:13.1.1.3.1 | Gene3D:4.10.365.10 | GO:A0A078EEK5 | InterPro:CDI | EnsemblPlants:CDX99264 | ProteinID:CDX99264 |
| ProteinID:CDX99264.1 | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030234 |
| EnsemblPlantsGene:GSBRNA2T00107511001 | PFAM:PF02234 | PIRSF:PIRSF017811 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF23 | UniParc:UPI0004EBFCB7 |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g33790D
Coordinates
chrLK031909:+:659977..661024
Molecular Weight (calculated)
19310.1 Da
IEP (calculated)
4.454
GRAVY (calculated)
-0.886
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MSERNLNSKR ESRELEASST SVSPLQKKKK LDDSSADSHA VVLAIPSPSV ASTQGRYSVT SDDDDKSSIV SSGCFSSESN ETVRNNPSSG VDLEDTVSEA
101: LGETTETEME SSSPALKRDN KPPGVSKIPT AEEVEAFLSE LEGGEDKQKR FIEKYNFDIV NDKPLQGRYM WDRLKP
101: LGETTETEME SSSPALKRDN KPPGVSKIPT AEEVEAFLSE LEGGEDKQKR FIEKYNFDIV NDKPLQGRYM WDRLKP
001: MSERKRELAE EASSTSFSPL KKTKLNDSSD SSPDSHDVIV FAVSSSSVAS SAALASDECS VTIGGEESDQ SSSISSGCFT SESKEIAKNS SSFGVDLEDH
101: QIETETETST FITSNFRKET SPVSEGLGET TTEMESSSAT KRKQPGVRKT PTAAEIEDLF SELESQDDKK KQFIEKYNFD IVNDEPLEGR YKWDRL
101: QIETETETST FITSNFRKET SPVSEGLGET TTEMESSSAT KRKQPGVRKT PTAAEIEDLF SELESQDDKK KQFIEKYNFD IVNDEPLEGR YKWDRL
Arabidopsis Description
KRP6At3g19150 [Source:UniProtKB/TrEMBL;Acc:A6QRA0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.