CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX76164
CDX83047
CDX87018
CDX87588
CDX88294
CDY05870
CDY13189
CDY46075
CDY63966
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	CDX87588	AT1G76540.1	12857813
AT1G70210.1	CDX88294	AT1G76540.1	12857813
AT1G70210.1	CDY46075	AT2G23430.1	12569402
AT1G70210.1	CDY63966	AT2G23430.1	12569402
AT1G70210.1	CDX68497	AT3G48750.1	12857813
AT1G70210.1	CDX83047	AT3G48750.1	12857813
AT1G70210.1	CDX87018	AT3G48750.1	12857813
AT1G70210.1	CDY05870	AT3G48750.1	12857813
AT1G70210.1	CDY66197	AT3G48750.1	12857813
AT1G70210.1	CDY67496	AT3G48750.1	12857813
AT1G70210.1	CDX76164	AT3G54180.1	12857813
AT1G70210.1	CDY13189	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38800	Canola	nucleus	96.53	95.92
CDY67142	Canola	nucleus	87.7	82.01
AT1G70210.1	Thale cress	nucleus	84.54	79.06
CDY59943	Canola	nucleus	88.64	77.84
VIT_01s0026g00710.t01	Wine grape	nucleus	63.72	62.35
KRH69476	Soybean	nucleus	61.51	57.52
Solyc05g006050.2.1	Tomato	nucleus	60.88	57.27
PGSC0003DMT400040287	Potato	nucleus	59.62	56.25
KRG99255	Soybean	nucleus	61.51	56.03
KRH45743	Soybean	nucleus	60.88	53.61
KRH74675	Soybean	nucleus, plastid	60.88	50.52
Os09t0382300-00	Rice	nucleus	43.22	44.48
GSMUA_Achr9P28180_001	Banana	nucleus	42.27	44.22
GSMUA_Achr3P06030_001	Banana	cytosol	41.01	43.92
OQU89443	Sorghum	nucleus	46.06	43.84
TraesCS5A01G200500.2	Wheat	nucleus	44.8	43.83
TraesCS5B01G199100.1	Wheat	nucleus	44.16	43.75
HORVU5Hr1G059770.2	Barley	nucleus	44.8	39.78
TraesCS5D01G206200.1	Wheat	nucleus	45.11	38.96
GSMUA_Achr7P19980_001	Banana	nucleus	45.74	37.28
Zm00001d020353_P001	Maize	nucleus	37.85	36.25
Os06t0236600-00	Rice	nucleus	41.32	36.09
CDY54717	Canola	nucleus	29.97	35.71
CDX81286	Canola	nucleus	29.65	35.34
CDY13755	Canola	nucleus	32.18	34.93
CDX97009	Canola	nucleus	30.6	33.11
CDX69832	Canola	nucleus	30.91	33.0
CDY37828	Canola	nucleus	30.91	31.72
CDY08795	Canola	nucleus	30.6	31.49
CDY33959	Canola	nucleus	30.28	31.48
CDY14561	Canola	cytosol	31.86	31.08
CDX76917	Canola	nucleus	34.07	30.51
CDY30606	Canola	cytosol, nucleus, plastid	16.4	30.23
CDX89480	Canola	nucleus	33.75	30.14
CDY17742	Canola	nucleus	33.75	30.14
CDY25602	Canola	nucleus	33.75	30.06
CDY02095	Canola	nucleus	30.91	29.88
CDY23022	Canola	nucleus	30.91	29.79
CDY30607	Canola	nucleus	33.12	29.75
CDX83112	Canola	nucleus	32.49	29.26
CDX68573	Canola	nucleus	31.86	28.69
CDX72453	Canola	nucleus	32.18	28.33
CDY22116	Canola	nucleus	26.5	28.19
CDY49278	Canola	nucleus	32.81	28.18
CDY57741	Canola	nucleus	31.86	27.67
CDX76265	Canola	nucleus	31.86	27.67
CDY21951	Canola	nucleus	25.87	27.15
CDY01425	Canola	nucleus	30.28	27.12
CDY12825	Canola	nucleus	30.6	27.09
CDY69708	Canola	nucleus	31.86	27.01
CDX75405	Canola	nucleus	31.55	26.81
CDX90892	Canola	nucleus	11.99	25.0
CDY29570	Canola	nucleus	25.55	24.25
CDY10467	Canola	cytosol	25.55	23.89
CDY40332	Canola	cytosol	25.55	23.82
CDX72643	Canola	nucleus	25.24	23.53
CDY55121	Canola	cytosol	24.61	22.74
CDX80803	Canola	cytosol	24.61	17.29

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	GO:A0A078FHR4	UniProt:A0A078FHR4	EnsemblPlants:CDY11608	ProteinID:CDY11608
ProteinID:CDY11608.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00049727001	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF206	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI0004EF0007	SEG:seg	:	:	:

Description

BnaC06g31310DBnaC06g31310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHR4]

Coordinates

chrLK032012:-:486420..489971

Molecular Weight (calculated)

35615.2 Da

IEP (calculated)

5.114

GRAVY (calculated)

-0.125

Length

317 amino acids

Sequence
(BLAST)

001: MDLFCGECSS GESTAEFSSE EVESWPDDSI ASCIEDERHF VPGLDYLSRF HSQSLDASAR EESVTWILQA RAFYSFQPLT AYLAVNYMDR FLYARRLPET
101: SGWPMQLLAV ACLSLAAKME EVVVPSLFDF QVEGVKYIFE AKTIQRMELL VLDVLDWRLR SVTPFSFLSF FAYKIDPLGT SLGFFRSHAT EIILSNIKEA
201: SFLEYRPSSI AAAAILCVAN ELPSLSSAAN LHDSPETWCN GLSKEKIVRC YKLMKAMAIE NNRRNSPRVI AKLRVSVRAA STLMRPSDES SSSSSSPSKR
301: RKLSDYSWVG DDKSSSE

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.