Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G200500.2 | Wheat | nucleus | 85.99 | 94.75 |
| TraesCS5B01G199100.1 | Wheat | nucleus | 84.59 | 94.38 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 85.43 | 83.11 |
| Os09t0382300-00 | Rice | nucleus | 63.87 | 74.03 |
| OQU89443 | Sorghum | nucleus | 68.35 | 73.27 |
| Zm00001d020353_P001 | Maize | nucleus | 56.3 | 60.73 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 43.98 | 53.04 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 41.74 | 49.17 |
| VIT_01s0026g00710.t01 | Wine grape | nucleus | 42.86 | 47.22 |
| KRH69476 | Soybean | nucleus | 43.7 | 46.02 |
| KRG99255 | Soybean | nucleus | 43.7 | 44.83 |
| CDY11608 | Canola | nucleus | 39.78 | 44.8 |
| CDY38800 | Canola | nucleus | 39.78 | 44.51 |
| Bra007901.1-P | Field mustard | nucleus | 41.74 | 43.95 |
| CDY67142 | Canola | nucleus | 41.74 | 43.95 |
| AT1G70210.1 | Thale cress | nucleus | 41.46 | 43.66 |
| KRH45743 | Soybean | nucleus | 43.42 | 43.06 |
| Solyc05g006050.2.1 | Tomato | nucleus | 40.62 | 43.03 |
| PGSC0003DMT400040287 | Potato | nucleus | 40.34 | 42.86 |
| CDY59943 | Canola | nucleus | 42.58 | 42.11 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 44.82 | 41.13 |
| KRH74675 | Soybean | nucleus, plastid | 42.58 | 39.79 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 31.37 | 31.91 |
| HORVU7Hr1G033350.3 | Barley | cytosol | 25.21 | 29.9 |
| HORVU0Hr1G013250.1 | Barley | cytosol | 17.65 | 29.44 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 20.17 | 28.69 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 12.04 | 26.06 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 25.21 | 25.64 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 24.37 | 24.93 |
| HORVU4Hr1G013700.2 | Barley | plastid | 23.25 | 21.01 |
| HORVU2Hr1G030130.1 | Barley | plastid | 25.49 | 19.87 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | UniProt:A0A287REF5 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:HORVU5Hr1G059770 |
| EnsemblPlants:HORVU5Hr1G059770.2 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF206 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B481DEC | SEG:seg |
Description
No Description!
Coordinates
chrchr5H:+:466658222..466661739
Molecular Weight (calculated)
38896.6 Da
IEP (calculated)
5.063
GRAVY (calculated)
0.024
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: PPSQLHYRIA SAPPPRRPLD GNDCCSVTAP TGPAMPEDDA SYLLCAEEAF FFVDAASAAA STCTTAEQDD GWCSGAEQES ASSFVAELIG GEADYSPRSD
101: YSNRLRSRSV DPAARADSVA WILKVTCTYG FLPLTAYLAV NYMDRFLSLH RLPQEDGWAM QLLAVTCLSL AAKMEETLVP SLLDLQIEST RYIFEPRTIL
201: RMELLVLTAL NWRLRSVTPF TFIDFFACKV DPRGRHMRYL IARATQMILA AIHDIEFLDH CPSSMAAAAV LCAAGETPSL TLLNPRLAVN WCIGLAEEGV
301: SSCYQLMQQL VGGKRAKTAA AAAVNLCSDE VLSCDSSSCT TPPPPKRRKR SPPPVIT
101: YSNRLRSRSV DPAARADSVA WILKVTCTYG FLPLTAYLAV NYMDRFLSLH RLPQEDGWAM QLLAVTCLSL AAKMEETLVP SLLDLQIEST RYIFEPRTIL
201: RMELLVLTAL NWRLRSVTPF TFIDFFACKV DPRGRHMRYL IARATQMILA AIHDIEFLDH CPSSMAAAAV LCAAGETPSL TLLNPRLAVN WCIGLAEEGV
301: SSCYQLMQQL VGGKRAKTAA AAAVNLCSDE VLSCDSSSCT TPPPPKRRKR SPPPVIT
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.