Factsheet for VIT_03s0063g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00210.t01	nucleus
VIT_01s0026g00710.t01	endoplasmic reticulum
VIT_03s0180g00040.t01	nucleus
VIT_07s0129g00200.t01	nucleus
VIT_07s0129g01100.t01	nucleus
VIT_07s0141g00330.t01
VIT_12s0134g00500.t01	nucleus
VIT_15s0045g00310.t01
VIT_18s0089g00210.t01
VIT_19s0090g00280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19150.1	VIT_01s0026g00710.t01	AT1G70210.1	20407024
AT3G19150.1	VIT_18s0089g00210.t01	AT1G71380.1	20706207
AT3G19150.1	VIT_15s0045g00310.t01	AT3G48750.1	11449057
AT3G19150.1	VIT_07s0141g00330.t01	AT3G54650.1	18948957
AT3G19150.1	VIT_12s0134g00500.t01	AT4G03270.1	20407024
AT3G19150.1	VIT_03s0180g00040.t01	AT4G34160.1	20407024
AT3G19150.1	VIT_07s0129g01100.t01	AT4G34160.1	20407024
AT3G19150.1	VIT_07s0129g00200.t01	AT4G37630.1	20407024
AT3G19150.1	VIT_00s0199g00210.t01	AT5G10440.1	20407024
AT3G19150.1	VIT_19s0090g00280.t01	AT5G54900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	14.16	53.45
GSMUA_Achr9P27040_001	Banana	cytosol, mitochondrion, nucleus	13.24	49.15
TraesCS5A01G240600.1	Wheat	plastid	16.44	40.45
VIT_07s0031g00800.t01	Wine grape	plastid	38.81	40.09
EER99015	Sorghum	plastid	14.61	37.65
KRH71159	Soybean	nucleus, plastid	27.4	34.09
KRH50258	Soybean	nucleus, plastid	28.31	33.16
Solyc01g108610.2.1	Tomato	nucleus	32.42	32.57
Bra018812.1-P	Field mustard	nucleus	22.83	30.3
PGSC0003DMT400066394	Potato	nucleus	26.48	30.21
CDY50958	Canola	nucleus	22.83	30.12
TraesCS5B01G238600.1	Wheat	plastid	17.35	29.92
CDY28100	Canola	nucleus	25.11	29.73
AT1G49620.3	Thale cress	nucleus	26.94	29.5
TraesCS5D01G247100.1	Wheat	plastid	16.89	28.24
AT3G19150.1	Thale cress	nucleus	24.66	27.55
CDX92305	Canola	nucleus	21.92	27.27
CDX99264	Canola	nucleus	21.0	26.14
CDY22987	Canola	nucleus	21.92	25.0
Bra001736.1-P	Field mustard	nucleus	20.09	24.86
CDX82309	Canola	nucleus	21.46	24.61
GSMUA_Achr2P22370_001	Banana	nucleus	23.29	24.52
HORVU5Hr1G068770.6	Barley	nucleus	17.35	24.36
Bra022391.1-P	Field mustard	nucleus	13.24	20.0
GSMUA_Achr10P...	Banana	nucleus, plastid	20.09	19.82

Protein Annotations

EntrezGene:100250434	wikigene:100250434	MapMan:13.1.1.3.1	Gene3D:4.10.365.10	ProteinID:CCB56881	ProteinID:CCB56881.1
InterPro:CDI	UniProt:F6HQC4	EMBL:FN596006	GO:GO:0003674	GO:GO:0004860	GO:GO:0004861
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006469
GO:GO:0007049	GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0030234	GO:GO:0071901	EntrezGene:LOC100250434	wikigene:LOC100250434	PFAM:PF02234	PIRSF:PIRSF017811
PANTHER:PTHR10265	PANTHER:PTHR10265:SF39	UniParc:UPI0001982F5F	ArrayExpress:VIT_03s0063g00670	EnsemblPlantsGene:VIT_03s0063g00670	EnsemblPlants:VIT_03s0063g00670.t01
unigene:Vvi.22654	RefSeq:XP_002282040	RefSeq:XP_002282040.2	RefSeq:XP_002282040.3	:	:

Description

Cyclin-dependent kinase inhibitor [Source:UniProtKB/TrEMBL;Acc:F6HQC4]

Coordinates

chr3:-:4207554..4209371

Molecular Weight (calculated)

24255.0 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.760

Length

219 amino acids

Sequence
(BLAST)

001: MKEYMSECET IVGIAVMEVG HGGVRVRPVE ASTTDASKRR RIASGELRTS PSSNVELRSN CCYVNSPPDS PSPAQSENYV EQVLGDLCAS SCADHAPESR
101: CSSNEPGEVV RSSLRSADLE AKGFETENST YSDGRFSRET TPVSELYADS AEMESTAKTT AAKPRRKSTA GKMPSTVEIE EFFSAAEKYQ QQRFAEKYNY
201: DIVKDAPMEG RYQWVRLER

Best Arabidopsis Sequence Match ( AT1G49620.1 )
(BLAST)

001: MSETKPKRDS EYEGSNIKRM RLDDDDDVLR SPTRTLSSSS SSSLAYSVSD SGGFCSVALS EEEDDHLSSS ISSGCSSSET NEIATRLPFS DLEAHEISET
101: EISTLLTNNF RKQGISSSEN LGETAEMDSA TTEMRDQRKT EKKKKMEKSP TQAELDDFFS AAERYEQKRF TEKYNYDIVN DTPLEGRYQW VSLKP

Arabidopsis Description

KRP7Cyclin-dependent kinase inhibitor family protein [Source:TAIR;Acc:AT1G49620]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.