Factsheet for Bra022391.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002947.1-P
Bra007086.1-P
Bra007901.1-P	endoplasmic reticulum
Bra007982.1-P
Bra007983.1-P
Bra009031.1-P	nucleus
Bra011501.1-P	nucleus
Bra012909.1-P	nucleus
Bra014802.1-P
Bra016143.1-P
Bra017629.1-P	nucleus
Bra017840.1-P	nucleus
Bra018036.1-P
Bra029917.1-P
Bra029992.1-P	nucleus
Bra034198.1-P	nucleus
Bra034612.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19150.1	Bra007901.1-P	AT1G70210.1	20407024
AT3G19150.1	Bra007982.1-P	AT1G71380.1	20706207
AT3G19150.1	Bra007983.1-P	AT1G71380.1	20706207
AT3G19150.1	Bra016143.1-P	AT1G71380.1	20706207
AT3G19150.1	Bra018036.1-P	AT3G48750.1	11449057
AT3G19150.1	Bra029917.1-P	AT3G48750.1	11449057
AT3G19150.1	Bra012909.1-P	AT3G50070.1	20407024
AT3G19150.1	Bra029992.1-P	AT3G50070.1	20407024
AT3G19150.1	Bra007086.1-P	AT3G54650.1	18948957
AT3G19150.1	Bra014802.1-P	AT3G54650.1	18948957
AT3G19150.1	Bra034198.1-P	AT4G03270.1	20407024
AT3G19150.1	Bra011501.1-P	AT4G34160.1	20407024
AT3G19150.1	Bra017629.1-P	AT4G34160.1	20407024
AT3G19150.1	Bra034612.1-P	AT4G34160.1	20407024
AT3G19150.1	Bra017840.1-P	AT4G37630.1	20407024
AT3G19150.1	Bra009031.1-P	AT5G10440.1	20407024
AT3G19150.1	Bra002947.1-P	AT5G54900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92305	Canola	nucleus	68.97	56.82
CDX99264	Canola	nucleus	68.28	56.25
Bra001736.1-P	Field mustard	nucleus	40.69	33.33
AT3G19150.1	Thale cress	nucleus	40.69	30.1
EER99015	Sorghum	plastid	11.03	18.82
PGSC0003DMT400066394	Potato	nucleus	22.76	17.19
TraesCS5D01G247100.1	Wheat	plastid	15.17	16.79
Bra018812.1-P	Field mustard	nucleus	18.62	16.36
KRH71159	Soybean	nucleus, plastid	19.31	15.91
TraesCS5A01G240600.1	Wheat	plastid	9.66	15.73
Solyc01g108610.2.1	Tomato	nucleus	22.07	14.68
KRH28480	Soybean	plastid	20.0	14.15
GSMUA_Achr10P...	Banana	cytosol	5.52	13.79
VIT_07s0031g00800.t01	Wine grape	plastid	20.0	13.68
TraesCS5B01G238600.1	Wheat	plastid	11.72	13.39
VIT_03s0063g00670.t01	Wine grape	nucleus	20.0	13.24
KRH04631	Soybean	plastid	15.17	13.1
KRH50258	Soybean	nucleus, plastid	16.55	12.83
KRH76992	Soybean	nucleus, plastid	17.24	12.63
GSMUA_Achr9P27040_001	Banana	cytosol, mitochondrion, nucleus	4.83	11.86
HORVU5Hr1G068770.6	Barley	nucleus	12.41	11.54
KRH57804	Soybean	plastid	14.48	11.41
GSMUA_Achr2P22370_001	Banana	nucleus	15.17	10.58
PGSC0003DMT400040785	Potato	nucleus	13.79	9.22
Solyc02g090680.2.1	Tomato	nucleus	11.72	8.02
GSMUA_Achr10P...	Banana	nucleus, plastid	8.28	5.41

Protein Annotations

EnsemblPlants:Bra022391.1	EnsemblPlants:Bra022391.1-P	EnsemblPlantsGene:Bra022391	SEG:seg	UniParc:UPI0002547F73	UniProt:M4E0U4
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrA05:+:18001471..18001994

Molecular Weight (calculated)

15485.6 Da

IEP (calculated)

4.226

GRAVY (calculated)

-0.708

Length

145 amino acids

Sequence
(BLAST)

001: MSERNLNSKR ESRELEASST SVSPLQKKKK LDAVVLAIPS PSVASTQGRC SVTSDDDDKS SIVSSDCFSS ESNETVRNNP PSGADLEDTV SEALGETTET
101: ESSSSALKRD NKPPEVSKIP TAEEVEAFLS ELEGGDDFSV KITLK

Best Arabidopsis Sequence Match ( AT3G19150.2 )
(BLAST)

001: MSERKRELAE EASSTSFSPL KKTKLNDSSD SSPDSHDVIV FAVSSSSVAS SAALASDECS VTIGGEESDQ SSSISSGCFT SESKEIAKNS SSFGVDLEDH
101: QIETETETST FITSNFRKET SPVSEGLGET TTEMESSSAT KRKQPGVRKT PTAAEIEDLF SELESQDDKK KQFIEK

Arabidopsis Description

KRP6At3g19150 [Source:UniProtKB/TrEMBL;Acc:A6QRA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.