Factsheet for PGSC0003DMT400068627

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001218
PGSC0003DMT400008515
PGSC0003DMT400014299
PGSC0003DMT400017807
PGSC0003DMT400018062
PGSC0003DMT400032809
PGSC0003DMT400048460
PGSC0003DMT400056799
PGSC0003DMT400062212
PGSC0003DMT400077428
PGSC0003DMT400080042

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50070.1	PGSC0003DMT400014299	AT1G52730.1	20706207
AT3G50070.1	PGSC0003DMT400001218	AT2G27970.1	20706207
AT3G50070.1	PGSC0003DMT400048460	AT2G27970.1	20706207
AT3G50070.1	PGSC0003DMT400077428	AT3G48750.1	20706207
AT3G50070.1	PGSC0003DMT400018062	AT3G60750.1	20706207
AT3G50070.1	PGSC0003DMT400056799	AT3G60750.1	20706207
AT3G50070.1	PGSC0003DMT400080042	AT4G09320.1	20706207
AT3G50070.1	PGSC0003DMT400062212	AT4G24820.1	20706207
AT3G50070.1	PGSC0003DMT400008515	AT5G06110.1	20706207
AT3G50070.1	PGSC0003DMT400017807	AT5G40460.1	20706207
AT3G50070.1	PGSC0003DMT400032809	AT5G40460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g064860.1.1	Tomato	nucleus	65.91	86.38
Solyc02g064910.1.1	Tomato	nucleus	65.91	86.38
PGSC0003DMT400068629	Potato	cytosol	59.74	76.67
PGSC0003DMT400011487	Potato	nucleus	44.16	73.91
Solyc02g064900.1.1	Tomato	nucleus	82.79	73.7
PGSC0003DMT400064307	Potato	nucleus	64.61	54.82
PGSC0003DMT400031329	Potato	nucleus	54.87	52.48
CDY30606	Canola	cytosol, nucleus, plastid	21.43	38.37
PGSC0003DMT400039904	Potato	nucleus	38.64	36.96
PGSC0003DMT400020648	Potato	nucleus	38.64	35.84
PGSC0003DMT400066557	Potato	nucleus	41.23	35.47
AT3G50070.1	Thale cress	nucleus	41.56	35.46
CDX83112	Canola	nucleus	40.26	35.23
Bra029992.1-P	Field mustard	nucleus	40.26	35.23
CDY01425	Canola	nucleus	39.94	34.75
CDX68573	Canola	nucleus	39.61	34.66
CDY12825	Canola	nucleus	40.26	34.64
KRH04529	Soybean	nucleus	41.56	34.5
KRH57973	Soybean	nucleus	42.53	34.2
CDY02095	Canola	nucleus	36.36	34.15
Bra012909.1-P	Field mustard	nucleus	36.36	34.15
CDY23022	Canola	nucleus	36.36	34.04
Bra012146.1-P	Field mustard	nucleus	38.96	33.9
KRH77050	Soybean	nucleus, plastid	35.71	32.93
CDY30607	Canola	nucleus	37.66	32.86
Bra036051.1-P	Field mustard	nucleus	37.66	32.86
CDY17742	Canola	nucleus	37.34	32.39
KRH28424	Soybean	nucleus	35.06	32.24
AT5G67260.2	Thale cress	nucleus	41.88	31.93
PGSC0003DMT400033588	Potato	nucleus	29.87	25.84
PGSC0003DMT400088718	Potato	nucleus	24.68	24.52
PGSC0003DMT400037827	Potato	nucleus	26.62	23.84
TraesCS5B01G158400.1	Wheat	cytosol	26.95	23.45
PGSC0003DMT400040287	Potato	nucleus	25.32	23.21
HORVU5Hr1G050270.8	Barley	cytosol	26.3	23.08
TraesCS5D01G165900.1	Wheat	cytosol	26.3	22.88
TraesCS5A01G161000.1	Wheat	cytosol	26.3	22.88
GSMUA_Achr1P09780_001	Banana	cytosol	28.57	22.68
GSMUA_Achr2P05260_001	Banana	nucleus	25.32	22.61
GSMUA_Achr3P13140_001	Banana	nucleus	29.22	22.11
GSMUA_Achr4P20220_001	Banana	nucleus	25.65	21.82
GSMUA_AchrUn_...	Banana	cytosol	22.4	21.77
Os09t0111100-01	Rice	cytosol	25.65	21.7
GSMUA_Achr3P01010_001	Banana	nucleus	28.25	21.38
PGSC0003DMT400041637	Potato	nucleus	27.27	21.32
Zm00001d019696_P001	Maize	cytosol	25.97	20.67
EER96424	Sorghum	cytosol	24.35	19.63
Zm00001d005293_P001	Maize	cytosol	24.35	19.18
PGSC0003DMT400039033	Potato	nucleus	18.83	18.65
PGSC0003DMT400012934	Potato	nucleus	17.53	17.82
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	17.21	17.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400068627	EnsemblPlantsGene:PGSC0003DMG400026685	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF242	PFAM:PF00134	PFAM:PF02984	PGSC:PGSC0003DMG400026685	ScanProsite:PS00292	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0002952E26	UniProt:M1CJA9	MapMan:35.1	:

Description

Cyclin D3.2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026685]

Coordinates

chr2:-:23105272..23107037

Molecular Weight (calculated)

34721.8 Da

IEP (calculated)

4.432

GRAVY (calculated)

0.033

Length

308 amino acids

Sequence
(BLAST)

001: MVLHLHEQNI EPQNPILNFD ALLCEEGRLD EGDLGGGYHS DERNQNGVIE NVKKISPLIE CDLFWEDGEV ETLLSNEKVN LFYCTSLVSD GVLLGVRKKS
101: LEWMLTVIDH YGFNALTVVL AVNYFDRFIS GFLFQKVKPW MSQLVAVACL SIAAKVEEIQ VPLLLDLQEI WIDDQPTEFQ GKCENIILGI ITDSRLLHYP
201: PSVIATVTLF YVINEIEPCN AVDYLNQFMV VLKVRKDSID ECHDLILELM GIFGSKIYQT HKRKCQSIPG TPDGVIDAYF SCESSNYSLA VAPSVSSLPE
301: PQSKRSRT

Best Arabidopsis Sequence Match ( AT3G50070.1 )
(BLAST)

001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R

Arabidopsis Description

CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.