Factsheet for PGSC0003DMT400020648

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078470.2.1	Tomato	nucleus	94.88	93.75
PGSC0003DMT400039904	Potato	nucleus	65.06	67.08
VIT_18s0001g09920.t01	Wine grape	nucleus	58.73	52.42
KRH61348	Soybean	nucleus	51.81	49.28
PGSC0003DMT400066557	Potato	nucleus	51.51	47.77
KRH52038	Soybean	nucleus	51.2	46.96
PGSC0003DMT400064307	Potato	nucleus	47.89	43.8
PGSC0003DMT400068629	Potato	cytosol	31.63	43.75
PGSC0003DMT400031329	Potato	nucleus	41.57	42.86
PGSC0003DMT400011487	Potato	nucleus	22.89	41.3
PGSC0003DMT400068627	Potato	nucleus	35.84	38.64
GSMUA_Achr1P09780_001	Banana	cytosol	39.16	33.51
GSMUA_Achr2P05260_001	Banana	nucleus	34.34	33.04
GSMUA_Achr4P20220_001	Banana	nucleus	34.64	31.77
PGSC0003DMT400033588	Potato	nucleus	33.43	31.18
TraesCS5D01G165900.1	Wheat	cytosol	33.13	31.07
TraesCS5B01G158400.1	Wheat	cytosol	33.13	31.07
TraesCS5A01G161000.1	Wheat	cytosol	33.13	31.07
PGSC0003DMT400040287	Potato	nucleus	31.33	30.95
HORVU5Hr1G050270.8	Barley	cytosol	32.53	30.77
GSMUA_Achr3P13140_001	Banana	nucleus	37.65	30.71
GSMUA_AchrUn_...	Banana	cytosol	28.61	29.97
Os09t0111100-01	Rice	cytosol	31.02	28.3
PGSC0003DMT400088718	Potato	nucleus	26.2	28.06
GSMUA_Achr3P01010_001	Banana	nucleus	34.34	28.01
Zm00001d019696_P001	Maize	cytosol	32.23	27.65
PGSC0003DMT400037827	Potato	nucleus	28.61	27.62
Zm00001d005293_P001	Maize	cytosol	32.23	27.37
EER96424	Sorghum	cytosol	30.42	26.44
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	22.29	24.67
PGSC0003DMT400041637	Potato	nucleus	28.92	24.37
PGSC0003DMT400039033	Potato	nucleus	21.69	23.15
PGSC0003DMT400012934	Potato	nucleus	18.98	20.79

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	ProteinID:ABY25837	ProteinID:ABY25837.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EMBL:EU325649	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M1ADV6	PFAM:PF00134	PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400008001	PGSC:PGSC0003DMG400008001
EnsemblPlants:PGSC0003DMT400020648	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF342	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000295EADA	SEG:seg	:	:

Description

D-type cyclin family 3 subgroup 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400008001]

Coordinates

chr4:-:67754014..67756091

Molecular Weight (calculated)

38412.9 Da

IEP (calculated)

4.685

GRAVY (calculated)

-0.184

Length

332 amino acids

Sequence
(BLAST)

001: MSHHYQEQEE QKIPFLLDSL YCEEDILTEV SVETESFSSH DLLWEEEELT SLFSKETEYE ISYNVLEKDQ SFISARRESV EWILKTTAYY SFSAQTAFLA
101: VNYFDRFLLF SFNQSLNHKP WMNQLVAVTC LSLAAKVEET DVPLLLDLQV EKSRFVFESK TIQRMEMLVL STLKWKMNPV TPFSFLDFIT RRLGLKYCLS
201: LEFLRRCEKV LLYTITDGRF IGYLPSAMAS ATMLHVLDRL KPCIGEKYQD QLLGILGIVK DKVEECYRLI QEVACNIDFD SNKRKFGTLP GSPTGVMDVS
301: FSSDYSNDSW SVATSVTSSP EPLSKKIRES RE

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.