CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92238
KRH11866
KRH13310
KRH20664
KRH25124
KRH30550
KRH36887
KRH42252
KRH47306
KRH58370
KRH63701

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	KRH25124	AT2G27960.1	20706207
AT4G03270.1	KRH30550	AT2G27960.1	20706207
AT4G03270.1	KRG92238	AT2G32710.1	20706207
AT4G03270.1	KRH13310	AT3G12280.1	22921914
AT4G03270.1	KRH20664	AT3G12280.1	22921914
AT4G03270.1	KRH63701	AT3G12280.1	22921914
AT4G03270.1	KRH11866	AT3G48750.1	20706207
AT4G03270.1	KRH36887	AT3G48750.1	20706207
AT4G03270.1	KRH42252	AT3G48750.1	20706207
AT4G03270.1	KRH58370	AT3G48750.1	20706207
AT4G03270.1	KRH47306	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25470	Soybean	nucleus	90.88	92.28
KRH22479	Soybean	cytosol	65.96	68.67
KRH26876	Soybean	nucleus	63.53	66.35
VIT_12s0134g00500.t01	Wine grape	nucleus	48.63	54.42
PGSC0003DMT400039033	Potato	nucleus	48.33	51.13
Solyc07g054950.1.1	Tomato	nucleus	47.72	50.65
KRH10729	Soybean	nucleus	39.51	47.79
KRH21593	Soybean	nucleus	38.91	47.06
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	33.43	43.82
GSMUA_Achr6P24270_001	Banana	nucleus	40.43	43.75
AT4G03270.1	Thale cress	nucleus	39.21	42.72
CDY21951	Canola	nucleus	38.6	42.05
Bra034198.1-P	Field mustard	nucleus	37.99	41.95
CDY22116	Canola	nucleus	37.99	41.95
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	36.17	39.67
CDX90892	Canola	nucleus	18.24	39.47
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	27.96	38.02
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	25.23	33.07
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	31.0	32.59
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	30.4	32.57
EER99528	Sorghum	cytosol	30.7	32.17
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	29.79	31.61
Os07t0556000-01	Rice	cytosol	29.79	30.62
GSMUA_Achr9P12120_001	Banana	nucleus	37.99	29.62
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	30.7	29.62
KRH72435	Soybean	nucleus	30.09	27.73
KRH16827	Soybean	nucleus	29.79	27.61
KRH69476	Soybean	nucleus	26.75	25.96
KRH52917	Soybean	nucleus	27.66	25.85
KRH45568	Soybean	nucleus	27.05	25.72
HORVU7Hr1G117300.3	Barley	cytosol	12.77	25.45
KRH62196	Soybean	nucleus	27.05	25.28
KRH52092	Soybean	nucleus	24.01	25.16
KRH28424	Soybean	nucleus	25.53	25.07
KRG99255	Soybean	nucleus	26.44	25.0
KRH61407	Soybean	nucleus	23.71	25.0
KRH69654	Soybean	cytosol	18.24	24.69
KRG99448	Soybean	nucleus	26.75	24.58
KRH35652	Soybean	nucleus	22.49	24.5
KRH45743	Soybean	nucleus	26.44	24.17
KRH77050	Soybean	nucleus, plastid	24.32	23.95
KRH74510	Soybean	nucleus	26.14	23.82
KRH58137	Soybean	nucleus	22.8	23.58
KRH04529	Soybean	nucleus	26.14	23.18
KRG91131	Soybean	nucleus	22.8	23.15
KRH05626	Soybean	cytosol	14.89	22.79
KRH28363	Soybean	nucleus	22.8	22.66
KRH74675	Soybean	nucleus, plastid	26.14	22.51
KRH04404	Soybean	vacuole	22.8	22.06
KRH57973	Soybean	nucleus	24.92	21.41
KRH61348	Soybean	nucleus	22.49	21.2
KRH65892	Soybean	cytosol	18.54	21.18
KRG90996	Soybean	nucleus	25.23	21.12
KRH77118	Soybean	nucleus	21.28	21.08
KRH75669	Soybean	cytosol	18.24	20.76
KRH15412	Soybean	cytosol	16.41	20.0
KRH35760	Soybean	nucleus	24.32	19.9
KRH52038	Soybean	nucleus	21.58	19.61
KRH54628	Soybean	cytosol	8.21	17.65
KRH54622	Soybean	cytosol	8.21	17.65

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100820404	MapMan:13.1.1.1.4	EMBL:ACUP02004090	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_06G299700	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051726
UniProt:K7KY76	EnsemblPlants:KRH56054	ProteinID:KRH56054	ProteinID:KRH56054.1	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF188	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0002339B87	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:48844603..48847589

Molecular Weight (calculated)

36925.4 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.036

Length

329 amino acids

Sequence
(BLAST)

001: MEFDLENPFE NLHSDAVSYL FLIESDHTPS QNHSQTLKAR DLDISVRREL ISLISQLSCA LDPVLSYLAI NYLDRFLANQ GILQPKPWVL RLIAVSCISL
101: AVKMMRTEYP FTDVQALLNQ SDGGIIFETQ TIQRMEALIL GALQWRMRSI TPFSFVAFFI ALMGLKDLPM GQVLKNRASE IIFKSQREIR LWGFKPSIIA
201: ASALLCASHE LFPFQYPSFL KAISDSSYVN KESVEQCYKV IQDIAIEEEY SSALNGVSSS DTPINVLDHH FLSSESQKTN GITVANTIAV SSPLRDLKRR
301: KITGCGCGGN NPTIHNSRIQ FSHAKESEK

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.