Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45568 | Soybean | nucleus | 86.03 | 89.02 |
| KRH74510 | Soybean | nucleus | 57.54 | 57.06 |
| KRH69654 | Soybean | cytosol | 38.55 | 56.79 |
| Bra038518.1-P | Field mustard | nucleus | 43.3 | 53.45 |
| CDY13755 | Canola | nucleus | 43.3 | 53.08 |
| Solyc11g010460.1.1 | Tomato | cytosol | 46.09 | 52.88 |
| Solyc05g051410.2.1 | Tomato | nucleus | 50.56 | 52.62 |
| PGSC0003DMT400037827 | Potato | nucleus | 50.56 | 52.62 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 36.31 | 52.21 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 49.72 | 51.3 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 49.44 | 50.14 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 48.88 | 50.0 |
| GSMUA_Achr10P... | Banana | nucleus | 48.04 | 50.0 |
| GSMUA_Achr10P... | Banana | nucleus | 44.69 | 49.84 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 47.21 | 48.7 |
| CDX81286 | Canola | nucleus | 35.75 | 48.12 |
| CDY54717 | Canola | nucleus | 35.75 | 48.12 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 48.04 | 48.04 |
| AT5G10440.1 | Thale cress | nucleus | 39.66 | 47.65 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 45.81 | 47.4 |
| KRH52917 | Soybean | nucleus | 46.09 | 46.88 |
| KRH62196 | Soybean | nucleus | 46.09 | 46.88 |
| AT5G65420.3 | Thale cress | nucleus | 41.62 | 46.86 |
| KRH16827 | Soybean | nucleus | 46.37 | 46.76 |
| CDX97009 | Canola | nucleus | 38.27 | 46.76 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 45.53 | 46.7 |
| TraesCS6B01G345300.1 | Wheat | plastid | 45.81 | 46.46 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 46.65 | 46.26 |
| CDY08795 | Canola | nucleus | 39.66 | 46.1 |
| KRH72435 | Soybean | nucleus | 45.81 | 45.94 |
| Bra009031.1-P | Field mustard | nucleus | 37.99 | 45.79 |
| Bra024383.1-P | Field mustard | nucleus | 39.39 | 45.78 |
| PGSC0003DMT400041637 | Potato | nucleus | 50.28 | 45.69 |
| CDX89480 | Canola | nucleus | 45.25 | 45.63 |
| Bra030232.1-P | Field mustard | nucleus | 45.25 | 45.63 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 44.69 | 45.58 |
| CDY25602 | Canola | nucleus | 45.25 | 45.51 |
| CDX76917 | Canola | nucleus | 44.97 | 45.48 |
| CDX69832 | Canola | nucleus | 37.71 | 45.45 |
| Bra037817.1-P | Field mustard | nucleus | 35.75 | 45.39 |
| AT2G22490.2 | Thale cress | nucleus | 45.81 | 45.3 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 44.97 | 44.97 |
| CDY14561 | Canola | cytosol | 39.94 | 44.0 |
| Bra031858.1-P | Field mustard | nucleus | 35.75 | 42.81 |
| Zm00001d052185_P001 | Maize | nucleus | 43.02 | 42.78 |
| CDY33959 | Canola | nucleus | 36.31 | 42.62 |
| Zm00001d018128_P001 | Maize | nucleus | 42.18 | 42.54 |
| EES07560 | Sorghum | nucleus | 42.18 | 42.18 |
| CDY37828 | Canola | nucleus | 36.03 | 41.75 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 28.77 | 40.87 |
| KXG19603 | Sorghum | nucleus | 37.43 | 38.51 |
| KRH35652 | Soybean | nucleus | 29.89 | 35.43 |
| KRH69476 | Soybean | nucleus | 32.12 | 33.92 |
| KRH05626 | Soybean | cytosol | 20.11 | 33.49 |
| KRG91131 | Soybean | nucleus | 29.89 | 33.02 |
| KRH04529 | Soybean | nucleus | 32.68 | 31.54 |
| KRH57973 | Soybean | nucleus | 33.24 | 31.07 |
| KRH21593 | Soybean | nucleus | 23.46 | 30.88 |
| KRH61407 | Soybean | nucleus | 26.82 | 30.77 |
| KRH15412 | Soybean | cytosol | 23.18 | 30.74 |
| KRH52092 | Soybean | nucleus | 26.54 | 30.25 |
| KRG99255 | Soybean | nucleus | 29.33 | 30.17 |
| KRH28424 | Soybean | nucleus | 28.21 | 30.15 |
| KRH74675 | Soybean | nucleus, plastid | 31.84 | 29.84 |
| KRH10729 | Soybean | nucleus | 22.63 | 29.78 |
| KRH45743 | Soybean | nucleus | 29.89 | 29.72 |
| KRH58137 | Soybean | nucleus | 26.26 | 29.56 |
| KRH52038 | Soybean | nucleus | 29.89 | 29.56 |
| KRH61348 | Soybean | nucleus | 28.49 | 29.23 |
| KRH77050 | Soybean | nucleus, plastid | 26.82 | 28.74 |
| KRH04404 | Soybean | vacuole | 27.09 | 28.53 |
| KRH28363 | Soybean | nucleus | 25.98 | 28.1 |
| KRG90996 | Soybean | nucleus | 29.89 | 27.23 |
| KRH22479 | Soybean | cytosol | 23.74 | 26.9 |
| KRH56054 | Soybean | cytosol, nucleus, plasma membrane | 24.58 | 26.75 |
| KRH35760 | Soybean | nucleus | 29.89 | 26.62 |
| KRH77118 | Soybean | nucleus | 24.58 | 26.51 |
| KRH26876 | Soybean | nucleus | 23.18 | 26.35 |
| KRH25470 | Soybean | nucleus | 23.74 | 26.23 |
| KRH54628 | Soybean | cytosol | 10.61 | 24.84 |
| KRH54622 | Soybean | cytosol | 10.61 | 24.84 |
| KRH75669 | Soybean | cytosol | 19.83 | 24.57 |
| KRH65892 | Soybean | cytosol | 19.55 | 24.31 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EMBL:ACUP02011064 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | EnsemblPlantsGene:GLYMA_18G145600 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| UniProt:K7MS55 | EnsemblPlants:KRG99448 | ProteinID:KRG99448 | ProteinID:KRG99448.1 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SUPFAM:SSF47954 |
| UniParc:UPI000233EC7D | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:-:24295236..24297895
Molecular Weight (calculated)
40121.0 Da
IEP (calculated)
4.656
GRAVY (calculated)
-0.010
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSIDPATS TLLSLENNAT CFDEFDCNVA DESLSWDHKH LNFNNQCLIK DNHGSEHFWD FSVLSDETVM DLVGRESEHL PHVGYLKRLL SGDLDLSVRN
101: EALDWIWKAH AYYGFGPCSL CLSVNYLDRF LSVYELPRGK SWSIQLLAVA CLSIAAKMEE IKVPPFVDLQ VGEPKFVFEA KTIQRMELLV LSTLRWQMQA
201: STPFSFLDYF LRKINCDQVI VKSSIMRSVG PILNIIKCIN FLEFRPSEIA AAVAISVSRE IQAEEIDKAL QMQAEETAAA CFFIVGKERI LKGLELIKDL
301: SLMQDSANLG NNLASFVPQS PIGVLDAACL SSISDELTVG SYRDSSLDTP NSKRRKSD
101: EALDWIWKAH AYYGFGPCSL CLSVNYLDRF LSVYELPRGK SWSIQLLAVA CLSIAAKMEE IKVPPFVDLQ VGEPKFVFEA KTIQRMELLV LSTLRWQMQA
201: STPFSFLDYF LRKINCDQVI VKSSIMRSVG PILNIIKCIN FLEFRPSEIA AAVAISVSRE IQAEEIDKAL QMQAEETAAA CFFIVGKERI LKGLELIKDL
301: SLMQDSANLG NNLASFVPQS PIGVLDAACL SSISDELTVG SYRDSSLDTP NSKRRKSD
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.