Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P06730_001 | Banana | nucleus | 76.57 | 77.23 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 76.57 | 77.23 |
| GSMUA_Achr10P... | Banana | nucleus | 65.71 | 71.65 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 70.57 | 68.99 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 68.29 | 68.48 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 67.43 | 68.21 |
| GSMUA_Achr10P... | Banana | nucleus | 66.86 | 68.02 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 48.0 | 67.47 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 68.0 | 65.93 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 60.86 | 60.34 |
| GSMUA_Achr10P... | Banana | nucleus | 61.14 | 60.28 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 60.29 | 58.13 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 57.71 | 56.74 |
| TraesCS6B01G345300.1 | Wheat | plastid | 56.86 | 56.37 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 56.0 | 55.21 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 54.86 | 54.7 |
| Solyc04g076040.2.1 | Tomato | nucleus | 55.14 | 54.37 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 55.43 | 54.19 |
| Zm00001d052185_P001 | Maize | nucleus | 54.86 | 53.33 |
| Zm00001d018128_P001 | Maize | nucleus | 53.71 | 52.96 |
| KRH16827 | Soybean | nucleus | 53.71 | 52.96 |
| PGSC0003DMT400033588 | Potato | nucleus | 53.71 | 52.81 |
| EES07560 | Sorghum | nucleus | 53.14 | 51.96 |
| KRH72435 | Soybean | nucleus | 52.29 | 51.26 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 36.57 | 50.79 |
| KRH52917 | Soybean | nucleus | 50.86 | 50.57 |
| KRH62196 | Soybean | nucleus | 50.57 | 50.28 |
| Solyc11g010460.1.1 | Tomato | cytosol | 43.71 | 49.04 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 49.43 | 49.01 |
| KRG99448 | Soybean | nucleus | 50.0 | 48.88 |
| Bra038518.1-P | Field mustard | nucleus | 40.29 | 48.62 |
| KRH45568 | Soybean | nucleus | 48.0 | 48.55 |
| CDY13755 | Canola | nucleus | 40.29 | 48.29 |
| KRH69654 | Soybean | cytosol | 32.86 | 47.33 |
| KRH74510 | Soybean | nucleus | 48.57 | 47.09 |
| CDX81286 | Canola | nucleus | 35.43 | 46.62 |
| PGSC0003DMT400037827 | Potato | nucleus | 45.14 | 45.93 |
| Solyc05g051410.2.1 | Tomato | nucleus | 45.14 | 45.93 |
| CDY54717 | Canola | nucleus | 34.86 | 45.86 |
| AT5G10440.1 | Thale cress | nucleus | 38.86 | 45.64 |
| AT5G65420.3 | Thale cress | nucleus | 41.43 | 45.6 |
| KXG19603 | Sorghum | nucleus | 45.14 | 45.4 |
| Solyc12g087900.1.1 | Tomato | nucleus | 40.29 | 44.62 |
| AT2G22490.2 | Thale cress | nucleus | 46.0 | 44.48 |
| Bra024383.1-P | Field mustard | nucleus | 38.86 | 44.16 |
| CDY08795 | Canola | nucleus | 38.57 | 43.83 |
| CDX69832 | Canola | nucleus | 37.14 | 43.77 |
| Bra009031.1-P | Field mustard | nucleus | 37.14 | 43.77 |
| CDX97009 | Canola | nucleus | 36.57 | 43.69 |
| CDX89480 | Canola | nucleus | 44.29 | 43.66 |
| Bra030232.1-P | Field mustard | nucleus | 44.29 | 43.66 |
| CDY25602 | Canola | nucleus | 44.29 | 43.54 |
| Bra037817.1-P | Field mustard | nucleus | 34.86 | 43.26 |
| CDY14561 | Canola | cytosol | 39.71 | 42.77 |
| CDX76917 | Canola | nucleus | 43.14 | 42.66 |
| PGSC0003DMT400088718 | Potato | nucleus | 37.71 | 42.58 |
| Bra031858.1-P | Field mustard | nucleus | 36.29 | 42.47 |
| CDY33959 | Canola | nucleus | 36.86 | 42.3 |
| CDY37828 | Canola | nucleus | 36.57 | 41.42 |
| PGSC0003DMT400041637 | Potato | nucleus | 46.0 | 40.86 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 32.29 | 38.18 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 31.43 | 36.3 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 36.29 | 34.6 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 29.71 | 34.21 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 36.57 | 33.6 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 23.71 | 33.07 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 27.71 | 32.33 |
| GSMUA_Achr10P... | Banana | cytosol | 22.57 | 31.23 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 34.29 | 30.85 |
| GSMUA_Achr10P... | Banana | nucleus | 25.14 | 30.77 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 20.86 | 30.17 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 23.71 | 29.86 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 23.14 | 29.45 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 26.57 | 29.25 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 31.71 | 28.61 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 25.71 | 28.12 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.86 | 27.44 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 28.29 | 27.35 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 26.86 | 27.25 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 30.0 | 25.8 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 29.71 | 25.55 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 29.43 | 24.41 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr9G15070_001 | EnsemblPlants:GSMUA_Achr9P15070_001 |
| EnsemblPlants:GSMUA_Achr9T15070_001 | UniProt:M0U0G5 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000296F1EE |
| SEG:seg | : | : | : | : | : |
Description
Cyclin-D3-1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G15070_001]
Coordinates
chr9:-:9876899..9879370
Molecular Weight (calculated)
38459.0 Da
IEP (calculated)
4.822
GRAVY (calculated)
0.064
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSFDCAAS ILLCAEDNSS VLGFDDDVDG EEDGRGFGWV SGVKSPHFYG DFLVDFPVLS DERLGSLVER ETEYMPREDY AERLRSGALD LAIRRDAIDW
101: ILKVHAHYSF GPLSAYLAVN YLDRFLSGYE LPQGKAWMTQ LLSVACLSLA AKMEETEVPL SLDLQVGDAK YVFEAKTIQR MELLVLSTLK WRMQAVTPFS
201: YVDFFLHKFN GGSPPSKILV YRSVELILSM ARGTDLLVFR PSEVAAAIAL SALRETQVVE VEKALSCCIH VVQEGVLRCF EVIQDLMAVR SRPRKIAISS
301: VSSLPQSPIG VLDAACLSYN SDDTTAGSHA TCGGDSPASK RRKLSSSSIS
101: ILKVHAHYSF GPLSAYLAVN YLDRFLSGYE LPQGKAWMTQ LLSVACLSLA AKMEETEVPL SLDLQVGDAK YVFEAKTIQR MELLVLSTLK WRMQAVTPFS
201: YVDFFLHKFN GGSPPSKILV YRSVELILSM ARGTDLLVFR PSEVAAAIAL SALRETQVVE VEKALSCCIH VVQEGVLRCF EVIQDLMAVR SRPRKIAISS
301: VSSLPQSPIG VLDAACLSYN SDDTTAGSHA TCGGDSPASK RRKLSSSSIS
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.