Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P11710_001 | Banana | nucleus | 69.17 | 98.92 |
| AT2G27960.1 | Thale cress | cytosol | 60.15 | 91.95 |
| VIT_06s0061g00810.t01 | Wine grape | cytosol | 60.15 | 90.91 |
| KRH30550 | Soybean | cytosol | 60.15 | 90.91 |
| KRH25124 | Soybean | cytosol | 60.15 | 90.91 |
| Os03t0146300-01 | Rice | nucleus | 60.9 | 90.0 |
| PGSC0003DMT400001218 | Potato | cytosol | 59.4 | 89.77 |
| Zm00001d048394_P001 | Maize | nucleus | 58.65 | 89.66 |
| AT2G27970.1 | Thale cress | nucleus | 55.64 | 89.16 |
| PGSC0003DMT400048460 | Potato | cytosol | 58.65 | 88.64 |
| KXG40187 | Sorghum | nucleus | 57.89 | 88.51 |
| TraesCS4A01G410900.1 | Wheat | nucleus | 59.4 | 87.78 |
| TraesCS4B01G311000.1 | Wheat | nucleus | 59.4 | 87.78 |
| TraesCS4D01G308900.1 | Wheat | nucleus | 59.4 | 87.78 |
| CDY30517 | Canola | cytosol | 48.87 | 80.25 |
| CDX77145 | Canola | cytosol | 48.87 | 80.25 |
| Bra034380.1-P | Field mustard | cytosol | 48.87 | 80.25 |
| Zm00001d027655_P001 | Maize | cytosol | 54.14 | 69.23 |
| HORVU4Hr1G079310.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 61.65 | 61.19 |
| Zm00001d015611_P002 | Maize | plastid | 48.87 | 36.31 |
Protein Annotations
| MapMan:13.1.1.2.8 | Gene3D:3.30.170.10 | InterPro:Cyclin-dep_kinase_reg-sub | InterPro:Cyclin-dep_kinase_reg-sub_sf | GO:GO:0003674 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016538 | GO:GO:0019538 |
| GO:GO:0030234 | GO:GO:0045859 | GO:GO:0051301 | EnsemblPlantsGene:GSMUA_Achr2G11750_001 | EnsemblPlants:GSMUA_Achr2P11750_001 | EnsemblPlants:GSMUA_Achr2T11750_001 |
| InterPro:IPR036858 | UniProt:M0S766 | PFAM:PF01111 | PRINTS:PR00296 | ScanProsite:PS00944 | PANTHER:PTHR23415 |
| PANTHER:PTHR23415:SF29 | SMART:SM01084 | SUPFAM:SSF55637 | UniParc:UPI0002967AFA | SEG:seg | : |
Description
Cyclin-dependent kinases regulatory subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G11750_001]
Coordinates
chr2:-:14441537..14442374
Molecular Weight (calculated)
15617.8 Da
IEP (calculated)
9.813
GRAVY (calculated)
-0.626
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MTCFHLIERI LSLSPGLCDA LPHSRCDRSR RRSWSGRKIE MGQIQYSEKY FDDTFEYRHV VLPPEVAKLL PKNRLLSENE WRAIGVQQSR GWVHYAIHRP
101: EPHIMLFRRP LNYQQQQENQ AAAAAHAAQV LPK
101: EPHIMLFRRP LNYQQQQENQ AAAAAHAAQV LPK
1: MGQIQYSEKY FDDTFEYRHV VLPPEVAKLL PKNRLLSENE WRAIGVQQSR GWVHYAVHRP EPHIMLFRRP LNYQQQQENQ AQNMLVK
Arabidopsis Description
CKS1Cyclin-dependent kinases regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A178VPG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.