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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00900_001
GSMUA_Achr1P20410_001
GSMUA_Achr2P11710_001
GSMUA_Achr2P11750_001
GSMUA_Achr2P11790_001
GSMUA_Achr2P22370_001
GSMUA_Achr4P26490_001
GSMUA_Achr5P12920_001
GSMUA_Achr5P20430_001
GSMUA_Achr5P21770_001
GSMUA_Achr6P36640_001
GSMUA_Achr8P12510_001
GSMUA_Achr9P27040_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G10440.1 GSMUA_Achr2P11710_001 AT2G27960.1 20706207
AT5G10440.1 GSMUA_Achr2P11750_001 AT2G27960.1 20706207
AT5G10440.1 GSMUA_Achr2P11710_001 AT2G27970.1 20706207
AT5G10440.1 GSMUA_Achr2P11750_001 AT2G27970.1 20706207
AT5G10440.1 GSMUA_Achr11P... AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr11P... AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr1P00900_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr1P20410_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr2P11790_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr4P26490_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr5P12920_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr5P20430_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr5P21770_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr6P36640_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr8P12510_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr10P... AT3G19150.1 20706207
AT5G10440.1 GSMUA_Achr10P... AT3G19150.1 20706207
AT5G10440.1 GSMUA_Achr2P22370_001 AT3G19150.1 20706207
AT5G10440.1 GSMUA_Achr9P27040_001 AT3G19150.1 20706207
AT5G10440.1 GSMUA_Achr11P... AT3G48750.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr10P... Banana nucleus 67.04 75.39
GSMUA_Achr5P17920_001 Banana nucleus 69.25 72.25
GSMUA_Achr7P19040_001 Banana cytosol, endoplasmic reticulum, nucleus 67.87 68.44
GSMUA_Achr9P15070_001 Banana nucleus 65.93 68.0
GSMUA_Achr6P02210_001 Banana plastid 45.98 66.67
GSMUA_Achr10P... Banana nucleus 63.43 66.57
GSMUA_Achr5P22980_001 Banana nucleus 64.27 66.48
GSMUA_Achr8P23430_001 Banana nucleus 62.6 65.13
GSMUA_Achr3P06730_001 Banana nucleus 62.05 64.55
GSMUA_Achr10P... Banana nucleus 57.34 58.31
GSMUA_Achr2P22330_001 Banana nucleus 56.51 57.3
GSMUA_Achr3P21210_001 Banana nucleus 55.4 56.66
TraesCS6B01G345300.1 Wheat plastid 53.46 54.67
GSMUA_Achr6P10260_001 Banana cytosol 54.57 54.27
VIT_18s0001g07220.t01 Wine grape nucleus 53.19 54.08
HORVU6Hr1G077500.1 Barley nucleus 52.35 53.85
TraesCS6A01G314900.1 Wheat nucleus 51.8 52.23
Solyc04g076040.2.1 Tomato nucleus 51.25 52.11
Zm00001d052185_P001 Maize nucleus 50.97 51.11
KRH16827 Soybean nucleus 50.14 50.99
PGSC0003DMT400033588 Potato nucleus 50.14 50.84
EES07560 Sorghum nucleus 50.14 50.56
Zm00001d018128_P001 Maize nucleus 49.31 50.14
KRH72435 Soybean nucleus 48.75 49.3
KRH52917 Soybean nucleus 46.26 47.44
Bra038518.1-P Field mustard nucleus 37.67 46.9
KRH62196 Soybean nucleus 45.71 46.88
TraesCS6D01G294200.1 Wheat nucleus 32.69 46.83
KRG99448 Soybean nucleus 46.26 46.65
CDY13755 Canola nucleus 37.67 46.58
KRH45568 Soybean nucleus 44.6 46.53
KRH74510 Soybean nucleus 45.98 45.98
VIT_00s0199g00210.t01 Wine grape nucleus 44.88 45.89
KRH69654 Soybean cytosol 30.75 45.68
CDX81286 Canola nucleus 33.52 45.49
CDY54717 Canola nucleus 33.24 45.11
Solyc11g010460.1.1 Tomato cytosol 38.78 44.87
Solyc12g087900.1.1 Tomato nucleus 38.78 44.3
AT5G65420.3 Thale cress nucleus 38.78 44.03
PGSC0003DMT400088718 Potato nucleus 37.4 43.55
PGSC0003DMT400037827 Potato nucleus 41.27 43.31
Bra037817.1-P Field mustard nucleus 33.52 42.91
AT5G10440.1 Thale cress nucleus 35.18 42.62
KXG19603 Sorghum nucleus 41.0 42.53
Solyc05g051410.2.1 Tomato nucleus 40.44 42.44
CDY14561 Canola cytosol 37.95 42.15
Bra024383.1-P Field mustard nucleus 35.73 41.88
CDY08795 Canola nucleus 35.46 41.56
Bra031858.1-P Field mustard nucleus 34.35 41.47
AT2G22490.2 Thale cress nucleus 41.55 41.44
CDX76917 Canola nucleus 40.17 40.96
CDY33959 Canola nucleus 34.35 40.66
CDX97009 Canola nucleus 32.96 40.61
Bra030232.1-P Field mustard nucleus 39.89 40.56
CDY37828 Canola nucleus 34.63 40.45
CDY25602 Canola nucleus 39.89 40.45
CDX69832 Canola nucleus 33.24 40.4
Bra009031.1-P Field mustard nucleus 33.24 40.4
CDX89480 Canola nucleus 39.34 40.0
PGSC0003DMT400041637 Potato nucleus 41.83 38.32
GSMUA_Achr3P06030_001 Banana cytosol 29.36 35.81
GSMUA_Achr9P28180_001 Banana nucleus 29.64 35.31
GSMUA_Achr4P23840_001 Banana cytosol, nucleus, plasma membrane 22.99 33.07
GSMUA_Achr6P24270_001 Banana nucleus 27.7 32.89
GSMUA_Achr7P26100_001 Banana nucleus 33.24 32.7
GSMUA_Achr1P22570_001 Banana nucleus 33.52 31.76
GSMUA_Achr9P30040_001 Banana cytosol, nucleus, peroxisome 21.05 31.41
GSMUA_Achr10P... Banana cytosol 21.61 30.83
GSMUA_Achr9P24600_001 Banana cytosol, nucleus, plasma membrane 25.48 30.67
GSMUA_Achr7P19980_001 Banana nucleus 32.96 30.59
GSMUA_Achr10P... Banana nucleus 22.44 28.32
GSMUA_Achr6P34040_001 Banana nucleus 21.05 27.64
GSMUA_Achr6P07740_001 Banana nucleus 23.82 27.04
GSMUA_Achr6P16910_001 Banana cytosol 20.5 26.62
GSMUA_Achr4P07110_001 Banana nucleus 22.99 25.94
GSMUA_Achr2P05260_001 Banana nucleus 24.65 25.8
GSMUA_Achr1P09780_001 Banana cytosol 27.7 25.77
GSMUA_Achr4P20220_001 Banana nucleus 25.76 25.69
GSMUA_AchrUn_... Banana cytosol 22.44 25.55
GSMUA_Achr3P13140_001 Banana nucleus 27.7 24.57
GSMUA_Achr3P01010_001 Banana nucleus 26.59 23.59
GSMUA_Achr9P12120_001 Banana nucleus 27.15 23.22
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.4InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_N
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0016020GO:GO:0016021
EnsemblPlantsGene:GSMUA_Achr7G12850_001EnsemblPlants:GSMUA_Achr7P12850_001EnsemblPlants:GSMUA_Achr7T12850_001UniProt:M0TH22PFAM:PF00134PFAM:PF02984
PANTHER:PTHR10177PANTHER:PTHR10177:SF213SMART:SM00385SMART:SM01332SUPFAM:SSF47954TMHMM:TMhelix
UniParc:UPI000295D4D1SEG:seg::::
Description
Cyclin-D4-1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G12850_001]
Coordinates
chr7:-:10342329..10344251
Molecular Weight (calculated)
40384.4 Da
IEP (calculated)
5.165
GRAVY (calculated)
-0.103
Length
361 amino acids
Sequence
(BLAST)
001: MVPSCDHASS ALLCAEDNSC VLGFDDEDDG DCEEELRISL LSEHKRRNFY GDPLTDIPPQ SDECLASLVE RESEHMPRED YAERLRYGAL DSSIRTDTID
101: RILKVASCFL MVMLIFLVHA HYNFGPLSAY LAVNYLDRFL SNYELPKGKA WMTQLLSVAC LSLAAKMEET EVPLSLDFQV GEANYVFEAK TIQRMELLVL
201: STLKWRMQAL TPFSFIDFFL HKFSGGNAPT KTVVSRSMEL ILSTVRGADF LAFRPSEIAA AITLLVSGER QPVDVEKAVS CCLQVAKEKV LRCCEVIKDM
301: ELMRSRPLRN DNISFSSVPP SSIGVSSAVC LSCKDDDLTV ESHATSHHNS SATKRRKPSR Q
Best Arabidopsis Sequence Match ( AT2G22490.1 )
(BLAST)
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.