Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P02210_001 | Banana | plastid | 53.87 | 75.5 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 76.22 | 74.3 |
| GSMUA_Achr10P... | Banana | nucleus | 72.49 | 73.55 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 67.91 | 68.3 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 68.48 | 68.29 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 66.19 | 66.57 |
| GSMUA_Achr10P... | Banana | nucleus | 60.17 | 65.42 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 63.9 | 64.45 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 66.48 | 64.27 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 59.31 | 58.64 |
| GSMUA_Achr10P... | Banana | nucleus | 59.03 | 58.03 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 59.03 | 57.87 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 57.88 | 55.65 |
| TraesCS6B01G345300.1 | Wheat | plastid | 54.44 | 53.82 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 53.3 | 52.99 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 53.58 | 52.23 |
| Zm00001d052185_P001 | Maize | nucleus | 53.58 | 51.94 |
| EES07560 | Sorghum | nucleus | 52.72 | 51.4 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 52.15 | 51.27 |
| Zm00001d018128_P001 | Maize | nucleus | 51.86 | 50.99 |
| KRH16827 | Soybean | nucleus | 51.86 | 50.99 |
| Solyc04g076040.2.1 | Tomato | nucleus | 51.86 | 50.99 |
| KRH72435 | Soybean | nucleus | 51.0 | 49.86 |
| PGSC0003DMT400033588 | Potato | nucleus | 50.72 | 49.72 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 34.96 | 48.41 |
| Bra038518.1-P | Field mustard | nucleus | 39.83 | 47.93 |
| KRH52917 | Soybean | nucleus | 48.14 | 47.73 |
| CDY13755 | Canola | nucleus | 39.83 | 47.6 |
| Solyc11g010460.1.1 | Tomato | cytosol | 41.83 | 46.79 |
| KRH62196 | Soybean | nucleus | 46.7 | 46.31 |
| KRH45568 | Soybean | nucleus | 45.56 | 45.95 |
| KRH74510 | Soybean | nucleus | 47.28 | 45.71 |
| KRH69654 | Soybean | cytosol | 31.81 | 45.68 |
| KRG99448 | Soybean | nucleus | 46.7 | 45.53 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 45.56 | 45.04 |
| CDX81286 | Canola | nucleus | 34.1 | 44.74 |
| CDY54717 | Canola | nucleus | 34.1 | 44.74 |
| KXG19603 | Sorghum | nucleus | 44.13 | 44.25 |
| AT5G65420.3 | Thale cress | nucleus | 40.11 | 44.03 |
| Solyc05g051410.2.1 | Tomato | nucleus | 42.98 | 43.6 |
| PGSC0003DMT400037827 | Potato | nucleus | 42.98 | 43.6 |
| Solyc12g087900.1.1 | Tomato | nucleus | 38.97 | 43.04 |
| AT5G10440.1 | Thale cress | nucleus | 36.68 | 42.95 |
| Bra024383.1-P | Field mustard | nucleus | 37.82 | 42.86 |
| CDY08795 | Canola | nucleus | 37.54 | 42.53 |
| Bra037817.1-P | Field mustard | nucleus | 34.1 | 42.2 |
| Bra009031.1-P | Field mustard | nucleus | 35.82 | 42.09 |
| CDX69832 | Canola | nucleus | 35.82 | 42.09 |
| CDY14561 | Canola | cytosol | 38.97 | 41.85 |
| AT2G22490.2 | Thale cress | nucleus | 43.27 | 41.71 |
| CDX97009 | Canola | nucleus | 34.67 | 41.3 |
| PGSC0003DMT400088718 | Potato | nucleus | 36.68 | 41.29 |
| CDX76917 | Canola | nucleus | 41.83 | 41.24 |
| Bra031858.1-P | Field mustard | nucleus | 35.24 | 41.14 |
| Bra030232.1-P | Field mustard | nucleus | 41.83 | 41.13 |
| CDY25602 | Canola | nucleus | 41.83 | 41.01 |
| CDY33959 | Canola | nucleus | 35.82 | 40.98 |
| CDX89480 | Canola | nucleus | 41.26 | 40.56 |
| CDY37828 | Canola | nucleus | 35.53 | 40.13 |
| PGSC0003DMT400041637 | Potato | nucleus | 44.41 | 39.34 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 30.09 | 35.47 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 29.23 | 33.66 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 34.38 | 32.7 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 22.64 | 31.47 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 33.52 | 30.71 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 26.07 | 29.93 |
| GSMUA_Achr10P... | Banana | cytosol | 21.2 | 29.25 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 32.38 | 29.05 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 24.64 | 28.67 |
| GSMUA_Achr10P... | Banana | nucleus | 23.21 | 28.32 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 19.48 | 28.1 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 24.93 | 27.36 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 21.2 | 26.91 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 21.2 | 26.62 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 24.36 | 26.56 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 28.65 | 25.77 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 26.07 | 25.14 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.06 | 24.29 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 28.08 | 24.08 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 23.78 | 24.06 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 27.51 | 23.59 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 26.93 | 22.27 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr5G22980_001 | EnsemblPlants:GSMUA_Achr5P22980_001 |
| EnsemblPlants:GSMUA_Achr5T22980_001 | UniProt:M0T0X3 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000294D3A0 | SEG:seg |
Description
Cyclin-D4-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G22980_001]
Coordinates
chr5:-:24839840..24842211
Molecular Weight (calculated)
38987.4 Da
IEP (calculated)
5.621
GRAVY (calculated)
-0.129
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPSYDSASS ILLCAEDGDS VLGFDDVEEQ RGHRPSWGSE PKRFDFYGDL PVDSTLQSDE RLGWLVEREQ GHLPREDYGQ RLRSGALDLS LRGDAIDWMW
101: KEGSLVHAHY NFGPLSAYLS VNYLDRFLSA YEFPQGKTWM TQLLVVACLT LAAKMEETEV LLSLDLQVGE TKYVFEDRTI QRMELLVLNT LKWRMQAVTP
201: FSYIDFFLHK FSGGNAPTKL LVSRSTELIL GTVKGIDCLA FRPSVIAAAI ALLVLRDTQV VDAEKSLSFC THVPKERVSA CFEVIQDKVF MWKQSLKDGS
301: SSSVSSVPQS PVGVLDAACL TYHSDDATVV SHATCLHTSP ASKRRKVSR
101: KEGSLVHAHY NFGPLSAYLS VNYLDRFLSA YEFPQGKTWM TQLLVVACLT LAAKMEETEV LLSLDLQVGE TKYVFEDRTI QRMELLVLNT LKWRMQAVTP
201: FSYIDFFLHK FSGGNAPTKL LVSRSTELIL GTVKGIDCLA FRPSVIAAAI ALLVLRDTQV VDAEKSLSFC THVPKERVSA CFEVIQDKVF MWKQSLKDGS
301: SSSVSSVPQS PVGVLDAACL TYHSDDATVV SHATCLHTSP ASKRRKVSR
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.