Factsheet for Solyc11g010460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g108610.2.1
Solyc02g090680.2.1
Solyc08g066330.1.1
Solyc09g061280.2.1
Solyc09g091780.2.1
Solyc12g098310.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10440.1	Solyc09g091780.2.1	AT2G32710.1	20706207
AT5G10440.1	Solyc12g098310.1.1	AT2G32710.1	20706207
AT5G10440.1	Solyc01g108610.2.1	AT3G19150.1	20706207
AT5G10440.1	Solyc02g090680.2.1	AT3G19150.1	20706207
AT5G10440.1	Solyc09g061280.2.1	AT3G24810.1	20706207
AT5G10440.1	Solyc08g066330.1.1	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041637	Potato	nucleus	96.79	76.65
Solyc05g051410.2.1	Tomato	nucleus	69.55	63.08
KRH69654	Soybean	cytosol	41.03	52.67
KRH74510	Soybean	nucleus	56.73	49.03
VIT_00s0199g00210.t01	Wine grape	nucleus	55.45	49.01
Bra038518.1-P	Field mustard	nucleus	44.55	47.93
CDY54717	Canola	nucleus	40.71	47.74
CDY13755	Canola	nucleus	44.55	47.6
CDX81286	Canola	nucleus	40.38	47.37
GSMUA_Achr6P02210_001	Banana	plastid	37.5	46.99
KRH45568	Soybean	nucleus	51.6	46.53
Bra031858.1-P	Field mustard	nucleus	44.23	46.15
KRG99448	Soybean	nucleus	52.88	46.09
AT5G65420.3	Thale cress	nucleus	46.79	45.91
Bra037817.1-P	Field mustard	nucleus	41.35	45.74
AT5G10440.1	Thale cress	nucleus	43.59	45.64
CDY33959	Canola	nucleus	44.55	45.57
Bra024383.1-P	Field mustard	nucleus	44.23	44.81
CDY37828	Canola	nucleus	44.23	44.66
CDY08795	Canola	nucleus	43.91	44.48
TraesCS6B01G345300.1	Wheat	plastid	49.68	43.91
GSMUA_Achr9P15070_001	Banana	nucleus	49.04	43.71
Bra030232.1-P	Field mustard	nucleus	49.68	43.66
HORVU6Hr1G077500.1	Barley	nucleus	49.04	43.59
CDY25602	Canola	nucleus	49.68	43.54
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	49.68	43.3
GSMUA_Achr3P06730_001	Banana	nucleus	48.08	43.23
CDX89480	Canola	nucleus	49.04	43.1
CDX69832	Canola	nucleus	40.71	42.76
TraesCS6A01G314900.1	Wheat	nucleus	49.04	42.74
Bra009031.1-P	Field mustard	nucleus	40.38	42.42
CDX76917	Canola	nucleus	48.08	42.37
GSMUA_Achr10P...	Banana	nucleus	43.59	42.37
CDX97009	Canola	nucleus	39.42	41.98
CDY14561	Canola	cytosol	43.59	41.85
GSMUA_Achr5P22980_001	Banana	nucleus	46.79	41.83
GSMUA_Achr8P23430_001	Banana	nucleus	46.47	41.79
GSMUA_Achr5P17920_001	Banana	nucleus	46.15	41.62
AT2G22490.2	Thale cress	nucleus	48.08	41.44
Solyc04g076040.2.1	Tomato	nucleus	47.12	41.41
GSMUA_Achr10P...	Banana	nucleus	44.87	40.7
Zm00001d052185_P001	Maize	nucleus	45.51	39.44
Zm00001d018128_P001	Maize	nucleus	44.87	39.44
EES07560	Sorghum	nucleus	44.55	38.83
GSMUA_Achr7P12850_001	Banana	nucleus	44.87	38.78
Solyc12g087900.1.1	Tomato	nucleus	37.18	36.71
KXG19603	Sorghum	nucleus	39.1	35.06
TraesCS6D01G294200.1	Wheat	nucleus	25.96	32.14
Solyc05g006050.2.1	Tomato	nucleus	33.97	31.45
Solyc12g088650.1.1	Tomato	nucleus	30.13	28.92
Solyc02g092980.2.1	Tomato	nucleus	32.05	27.86
Solyc04g078470.2.1	Tomato	nucleus	29.49	27.38
Solyc01g107730.2.1	Tomato	nucleus	31.41	26.92
Solyc02g064900.1.1	Tomato	nucleus	29.81	26.88
Solyc02g064910.1.1	Tomato	nucleus	19.87	26.38
Solyc02g064860.1.1	Tomato	nucleus	19.55	25.96
Solyc07g054950.1.1	Tomato	nucleus	23.08	23.23
Solyc02g079370.2.1	Tomato	nucleus	20.51	21.55
Solyc03g006670.2.1	Tomato	nucleus	19.55	19.61

Protein Annotations

EnsemblPlants:Solyc11g010460.1.1	EnsemblPlantsGene:Solyc11g010460.1	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10177	PANTHER:PTHR10177:SF337	PFAM:PF00134	PIRSF:PIRSF001771	ScanProsite:PS00292	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0002769642	UniProt:K4D5K7	MapMan:13.1.1.1.4	:

Description

No Description!

Coordinates

chr11:-:3514298..3516600

Molecular Weight (calculated)

35494.2 Da

IEP (calculated)

5.269

GRAVY (calculated)

0.009

Length

312 amino acids

Sequence
(BLAST)

001: MGENSNDLLL CTETKNLCFD DLDSLANDDQ KIQEKSKVLN FDYGRSVALI DLLPCLSEES FSVMLEREKV FLPKDDYLKR LRIGDLDLNH RREAVNWIWK
101: AHVHYGFGEL SFCLSINYLD RFLSLYELPR GKIWTIQLLA VACLSLAVKM EEINVPLTVD LQVGEPKFLF EGKTIQRMEL LVLSTLRWRM QAYTPCTFID
201: YFMRKMNLDE FPSMRLVSRS IQLILSIIKG IDFLEFRSSE IAADRVMKCF ELIQDLTLVS GTSATAAAAA TSVPQTPNGV LEAACLSYKS GEGTVLSCQN
301: AKRRKLDTNI IS

Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)

001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS

Arabidopsis Description

CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.