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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00900_001
GSMUA_Achr1P20410_001
GSMUA_Achr2P11710_001
GSMUA_Achr2P11750_001
GSMUA_Achr2P11790_001
GSMUA_Achr2P22370_001
GSMUA_Achr4P26490_001
GSMUA_Achr5P12920_001
GSMUA_Achr5P20430_001
GSMUA_Achr5P21770_001
GSMUA_Achr6P36640_001
GSMUA_Achr8P12510_001
GSMUA_Achr9P27040_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G10440.1 GSMUA_Achr2P11710_001 AT2G27960.1 20706207
AT5G10440.1 GSMUA_Achr2P11750_001 AT2G27960.1 20706207
AT5G10440.1 GSMUA_Achr2P11710_001 AT2G27970.1 20706207
AT5G10440.1 GSMUA_Achr2P11750_001 AT2G27970.1 20706207
AT5G10440.1 GSMUA_Achr11P... AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr11P... AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr1P00900_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr1P20410_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr2P11790_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr4P26490_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr5P12920_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr5P20430_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr5P21770_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr6P36640_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr8P12510_001 AT2G32710.1 20706207
AT5G10440.1 GSMUA_Achr10P... AT3G19150.1 20706207
AT5G10440.1 GSMUA_Achr10P... AT3G19150.1 20706207
AT5G10440.1 GSMUA_Achr2P22370_001 AT3G19150.1 20706207
AT5G10440.1 GSMUA_Achr9P27040_001 AT3G19150.1 20706207
AT5G10440.1 GSMUA_Achr11P... AT3G48750.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr7P12850_001 Banana nucleus 75.39 67.04
GSMUA_Achr5P17920_001 Banana nucleus 71.03 65.9
GSMUA_Achr9P15070_001 Banana nucleus 71.65 65.71
GSMUA_Achr6P02210_001 Banana plastid 50.16 64.66
GSMUA_Achr8P23430_001 Banana nucleus 68.22 63.11
GSMUA_Achr3P06730_001 Banana nucleus 67.6 62.54
GSMUA_Achr10P... Banana nucleus 66.67 62.21
GSMUA_Achr7P19040_001 Banana cytosol, endoplasmic reticulum, nucleus 68.22 61.17
GSMUA_Achr5P22980_001 Banana nucleus 65.42 60.17
GSMUA_Achr10P... Banana nucleus 61.06 55.21
GSMUA_Achr3P21210_001 Banana nucleus 57.94 52.69
GSMUA_Achr2P22330_001 Banana nucleus 57.94 52.25
GSMUA_Achr6P10260_001 Banana cytosol 58.57 51.79
TraesCS6B01G345300.1 Wheat plastid 56.39 51.27
VIT_18s0001g07220.t01 Wine grape nucleus 56.07 50.7
TraesCS6A01G314900.1 Wheat nucleus 55.76 50.0
HORVU6Hr1G077500.1 Barley nucleus 54.52 49.86
Zm00001d052185_P001 Maize nucleus 55.76 49.72
EES07560 Sorghum nucleus 55.14 49.44
KRH16827 Soybean nucleus 53.89 48.73
Zm00001d018128_P001 Maize nucleus 53.58 48.45
KRH72435 Soybean nucleus 53.27 47.9
Solyc04g076040.2.1 Tomato nucleus 52.65 47.61
PGSC0003DMT400033588 Potato nucleus 52.02 46.91
TraesCS6D01G294200.1 Wheat nucleus 35.83 45.63
Bra038518.1-P Field mustard nucleus 41.12 45.52
CDY13755 Canola nucleus 41.12 45.21
KRH45568 Soybean nucleus 48.6 45.09
KRH52917 Soybean nucleus 49.22 44.89
KRG99448 Soybean nucleus 49.84 44.69
VIT_00s0199g00210.t01 Wine grape nucleus 48.6 44.19
KRH69654 Soybean cytosol 33.33 44.03
Solyc11g010460.1.1 Tomato cytosol 42.37 43.59
KRH74510 Soybean nucleus 48.91 43.49
KRH62196 Soybean nucleus 47.66 43.47
Solyc12g087900.1.1 Tomato nucleus 42.68 43.35
PGSC0003DMT400037827 Potato nucleus 46.11 43.02
CDX81286 Canola nucleus 35.51 42.86
CDY54717 Canola nucleus 35.51 42.86
PGSC0003DMT400088718 Potato nucleus 41.12 42.58
KXG19603 Sorghum nucleus 45.79 42.24
AT5G65420.3 Thale cress nucleus 41.74 42.14
AT5G10440.1 Thale cress nucleus 38.94 41.95
Solyc05g051410.2.1 Tomato nucleus 44.86 41.86
AT2G22490.2 Thale cress nucleus 47.04 41.71
Bra031858.1-P Field mustard nucleus 38.32 41.14
Bra024383.1-P Field mustard nucleus 39.25 40.91
CDX97009 Canola nucleus 37.07 40.61
CDY08795 Canola nucleus 38.94 40.58
Bra037817.1-P Field mustard nucleus 35.51 40.43
CDY33959 Canola nucleus 38.01 40.0
CDY14561 Canola cytosol 40.5 40.0
CDY37828 Canola nucleus 38.32 39.81
CDX69832 Canola nucleus 36.76 39.73
Bra009031.1-P Field mustard nucleus 36.76 39.73
CDX89480 Canola nucleus 43.93 39.72
Bra030232.1-P Field mustard nucleus 43.61 39.44
CDY25602 Canola nucleus 43.61 39.33
CDX76917 Canola nucleus 42.99 38.98
PGSC0003DMT400041637 Potato nucleus 45.79 37.31
GSMUA_Achr3P06030_001 Banana cytosol 31.46 34.12
GSMUA_Achr9P28180_001 Banana nucleus 31.15 33.0
GSMUA_Achr7P26100_001 Banana nucleus 37.38 32.7
GSMUA_Achr6P24270_001 Banana nucleus 30.22 31.91
GSMUA_Achr10P... Banana cytosol 24.61 31.23
GSMUA_Achr1P22570_001 Banana nucleus 36.76 30.97
GSMUA_Achr4P23840_001 Banana cytosol, nucleus, plasma membrane 23.68 30.28
GSMUA_Achr9P24600_001 Banana cytosol, nucleus, plasma membrane 28.04 30.0
GSMUA_Achr6P34040_001 Banana nucleus 25.23 29.45
GSMUA_Achr6P07740_001 Banana nucleus 28.66 28.93
GSMUA_Achr9P30040_001 Banana cytosol, nucleus, peroxisome 21.81 28.93
GSMUA_Achr10P... Banana nucleus 25.23 28.32
GSMUA_Achr6P16910_001 Banana cytosol 24.3 28.06
GSMUA_Achr1P09780_001 Banana cytosol 33.64 27.84
GSMUA_Achr7P19980_001 Banana nucleus 33.02 27.25
GSMUA_Achr4P07110_001 Banana nucleus 26.48 26.56
GSMUA_Achr2P05260_001 Banana nucleus 28.35 26.38
GSMUA_Achr4P20220_001 Banana nucleus 28.97 25.69
GSMUA_AchrUn_... Banana cytosol 25.23 25.55
GSMUA_Achr3P13140_001 Banana nucleus 30.53 24.08
GSMUA_Achr3P01010_001 Banana nucleus 30.53 24.08
GSMUA_Achr9P12120_001 Banana nucleus 29.28 22.27
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.4InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_N
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634EnsemblPlantsGene:GSMUA_Achr10G25040_001EnsemblPlants:GSMUA_Achr10P25040_001
EnsemblPlants:GSMUA_Achr10T25040_001UniProt:M0RL78PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771ScanProsite:PS00292
PANTHER:PTHR10177PANTHER:PTHR10177:SF213SMART:SM00385SMART:SM01332SUPFAM:SSF47954UniParc:UPI0002961830
Description
Cyclin-D4-1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G25040_001]
Coordinates
chr10:-:29197941..29199488
Molecular Weight (calculated)
36489.6 Da
IEP (calculated)
5.697
GRAVY (calculated)
-0.225
Length
321 amino acids
Sequence
(BLAST)
001: MAPNDDCASS TLLCVEDSSC ILGFDNEDDA DDQEEHDLNR FYCLVSLVRR ETEHMPRDDY AERLRSGALD LSIRRDAIGW ILKVHAHYKF GPLSAYLSVN
101: YFDRFFSNYE LPKGKAWMTQ LLSVACLSLA AKMEETEVPL SMDLQERETK YDFEAKTIQR MELLVLSTLK WRMQAVTPFS YVEFFLHRFS GGNAPTKVEI
201: FRSVELILST ITGTEFLAFR PSEIAAAITL KVLGETQDVC IEKAVSCCIQ VAKEKVLRCY EVIKDMESMR DRPPRNARIS LSSVPQSPIG VLDAACLSYK
301: SDDFRHATCN HSSSASKRRK I
Best Arabidopsis Sequence Match ( AT2G22490.1 )
(BLAST)
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.