Factsheet for GSMUA_Achr10P00460_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P11710_001
GSMUA_Achr2P11750_001
GSMUA_Achr2P16400_001
GSMUA_Achr6P17910_001
GSMUA_Achr6P20740_001
GSMUA_Achr9P01520_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02110.1	GSMUA_Achr2P11710_001	AT2G27960.1	20706207
AT5G02110.1	GSMUA_Achr2P11750_001	AT2G27960.1	20706207
AT5G02110.1	GSMUA_Achr2P11710_001	AT2G27970.1	20706207
AT5G02110.1	GSMUA_Achr2P11750_001	AT2G27970.1	20706207
AT5G02110.1	GSMUA_Achr11P...	AT3G48750.1	20706207
AT5G02110.1	GSMUA_Achr2P16400_001	AT5G02220.1	20706207
AT5G02110.1	GSMUA_Achr6P17910_001	AT5G02220.1	20706207
AT5G02110.1	GSMUA_Achr6P20740_001	AT5G14170.1	20706207
AT5G02110.1	GSMUA_Achr9P01520_001	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34040_001	Banana	nucleus	66.8	61.45
TraesCS4B01G140400.1	Wheat	cytosol, nucleus, plastid	45.85	34.94
TraesCS4D01G135100.1	Wheat	cytosol, nucleus, plastid	45.85	34.42
TraesCS4A01G177400.1	Wheat	cytosol	45.06	34.23
Os11t0706801-00	Rice	nucleus	39.92	31.56
VIT_08s0007g00790.t01	Wine grape	nucleus	37.55	28.11
KRH65892	Soybean	cytosol	31.62	27.78
KRH54622	Soybean	cytosol	16.6	27.45
KRH54628	Soybean	cytosol	16.6	27.45
OQU84124	Sorghum	nucleus	45.45	26.93
KRH75669	Soybean	cytosol	30.04	26.3
Zm00001d048594_P001	Maize	cytosol	42.29	25.18
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	24.51	24.7
GSMUA_Achr10P...	Banana	nucleus	31.23	24.61
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	23.32	24.38
GSMUA_Achr5P17920_001	Banana	nucleus	32.02	23.41
GSMUA_Achr6P02210_001	Banana	plastid	22.92	23.29
GSMUA_Achr6P24270_001	Banana	nucleus	27.67	23.03
GSMUA_Achr9P28180_001	Banana	nucleus	27.27	22.77
CDY55121	Canola	cytosol	30.83	22.74
GSMUA_Achr3P06030_001	Banana	cytosol	26.48	22.64
GSMUA_Achr9P15070_001	Banana	nucleus	31.23	22.57
Bra005708.1-P	Field mustard	cytosol	30.43	22.45
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	26.48	22.33
CDY10467	Canola	cytosol	29.64	22.12
Bra009612.1-P	Field mustard	cytosol	29.64	22.06
CDY40332	Canola	cytosol	29.64	22.06
GSMUA_Achr3P06730_001	Banana	nucleus	30.04	21.9
GSMUA_Achr8P23430_001	Banana	nucleus	30.04	21.9
GSMUA_Achr10P...	Banana	nucleus	29.64	21.8
GSMUA_Achr7P12850_001	Banana	nucleus	30.83	21.61
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	30.04	21.23
GSMUA_Achr5P22980_001	Banana	nucleus	29.25	21.2
GSMUA_Achr6P10260_001	Banana	cytosol	30.04	20.94
GSMUA_Achr6P16910_001	Banana	cytosol	22.92	20.86
GSMUA_Achr10P...	Banana	nucleus	28.85	20.56
GSMUA_Achr10P...	Banana	nucleus	22.53	19.93
GSMUA_Achr3P21210_001	Banana	nucleus	27.67	19.83
GSMUA_Achr6P07740_001	Banana	nucleus	24.9	19.81
GSMUA_Achr2P22330_001	Banana	nucleus	27.27	19.38
AT5G02110.1	Thale cress	cytosol	26.09	19.35
GSMUA_Achr7P26100_001	Banana	nucleus	28.06	19.35
GSMUA_Achr1P22570_001	Banana	nucleus	28.46	18.9
GSMUA_AchrUn_...	Banana	cytosol	23.32	18.61
GSMUA_Achr7P19980_001	Banana	nucleus	28.46	18.51
GSMUA_Achr4P07110_001	Banana	nucleus	23.32	18.44
GSMUA_Achr1P09780_001	Banana	cytosol	26.48	17.27
GSMUA_Achr4P20220_001	Banana	nucleus	24.51	17.13
CDX80803	Canola	cytosol	30.43	17.07
GSMUA_Achr3P01010_001	Banana	nucleus	26.48	16.46
GSMUA_Achr3P13140_001	Banana	nucleus	24.9	15.48
GSMUA_Achr9P12120_001	Banana	nucleus	25.69	15.4
GSMUA_Achr2P05260_001	Banana	nucleus	20.55	15.07

Protein Annotations

EnsemblPlants:GSMUA_Achr10P00460_001	EnsemblPlants:GSMUA_Achr10T00460_001	EnsemblPlantsGene:GSMUA_Achr10G00460_001	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10177	PANTHER:PTHR10177:SF215	PFAM:PF00134	PIRSF:PIRSF001771	ScanProsite:PS00292
SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000296D36C	UniProt:M0RE73	MapMan:13.1.1.1.4

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr10G00460_001]

Coordinates

chr10:-:1032196..1033919

Molecular Weight (calculated)

28554.3 Da

IEP (calculated)

4.745

GRAVY (calculated)

-0.002

Length

253 amino acids

Sequence
(BLAST)

001: MESSGPCLLC DEEPFLVSPT PSPRRSSSPP PNADEDRDNS LRDLLEREHQ YAPRRGYLAY LRQSSNLSAA RTRAVRYIAQ VCSRLNLATG TAFSAVNYLD
101: RFISMNCVMR WEEWMVDLLS VACLSIASKM DEVSIPSWYD LQMEDLSHSF GASTIQEMEL MVLERLDWRL ACITPLSYVE VLTWGSEHTR TPCIARTIEL
201: LLCALSESEF LRFDPSSVAV SALKTIAGSE AGFFFSMLPF LIPLQHTIAY KLC

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.