CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68573	nucleus
CDX72453	nucleus
CDX72643	nucleus
CDX75405	nucleus
CDX76265	nucleus
CDX77460	nucleus
CDX83112	nucleus
CDX85167	nucleus
CDX92996	nucleus
CDX94841	nucleus
CDY02095	nucleus
CDY11608	nucleus
CDY16998	nucleus
CDY17797	nucleus
CDY18083	nucleus
CDY22172
CDY23022	nucleus
CDY27567
CDY29570	nucleus
CDY35481
CDY38800	nucleus
CDY40826
CDY49278	nucleus
CDY53612
CDY57741	nucleus
CDY58656
CDY59943	nucleus
CDY64587	nucleus
CDY67142	nucleus
CDY69708	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	CDY16998	AT1G47870.1	20407024
AT3G12280.1	CDY17797	AT1G47870.1	20407024
AT3G12280.1	CDY16998	AT1G47870.1	20706207
AT3G12280.1	CDY17797	AT1G47870.1	20706207
AT3G12280.1	CDY11608	AT1G70210.1	20407024
AT3G12280.1	CDY38800	AT1G70210.1	20407024
AT3G12280.1	CDY59943	AT1G70210.1	20407024
AT3G12280.1	CDY67142	AT1G70210.1	20407024
AT3G12280.1	CDY22172	AT3G08880.1	21798944
AT3G12280.1	CDY58656	AT3G08880.1	21798944
AT3G12280.1	CDY27567	AT3G20740.1	15221456
AT3G12280.1	CDY53612	AT3G20740.1	15221456
AT3G12280.1	CDY27567	AT3G20740.1	18812497
AT3G12280.1	CDY53612	AT3G20740.1	18812497
AT3G12280.1	CDX77460	AT3G24140.1	24571519
AT3G12280.1	CDX85167	AT3G24140.1	24571519
AT3G12280.1	CDX92996	AT3G24140.1	24571519
AT3G12280.1	CDX94841	AT3G24140.1	24571519
AT3G12280.1	CDY18083	AT3G24140.1	24571519
AT3G12280.1	CDY64587	AT3G24140.1	24571519
AT3G12280.1	CDX68573	AT3G50070.1	20407024
AT3G12280.1	CDX83112	AT3G50070.1	20407024
AT3G12280.1	CDY02095	AT3G50070.1	20407024
AT3G12280.1	CDY23022	AT3G50070.1	20407024
AT3G12280.1	CDY35481	AT3G55760.1	20706207
AT3G12280.1	CDY40826	AT3G55760.1	20706207
AT3G12280.1	CDX72453	AT4G34160.1	20407024
AT3G12280.1	CDX75405	AT4G34160.1	20407024
AT3G12280.1	CDX76265	AT4G34160.1	20407024
AT3G12280.1	CDY49278	AT4G34160.1	20407024
AT3G12280.1	CDY57741	AT4G34160.1	20407024
AT3G12280.1	CDY69708	AT4G34160.1	20407024
AT3G12280.1	CDX72643	AT4G37630.1	20407024
AT3G12280.1	CDY29570	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26019	Sorghum	cytosol	23.81	20.45
CDX73827	Canola	nucleus	67.1	15.33
CDY52614	Canola	cytosol	64.94	14.88
CDY08440	Canola	nucleus	64.5	14.67
AT3G12280.1	Thale cress	nucleus	63.64	14.51
CDY00765	Canola	mitochondrion	69.7	14.43
CDY50559	Canola	nucleus	63.2	14.38
CDY42141	Canola	cytosol	63.2	14.36
VIT_04s0008g02780.t01	Wine grape	nucleus	49.35	11.33
KRH20664	Soybean	nucleus	48.48	11.05
KRH63701	Soybean	nucleus	48.48	11.05
KRH13310	Soybean	nucleus	47.19	10.85
PGSC0003DMT400030280	Potato	nucleus	46.75	10.63
Solyc09g091280.2.1	Tomato	cytosol	46.32	10.51
GSMUA_Achr8P00470_001	Banana	nucleus	44.59	10.25
Os08t0538700-01	Rice	nucleus	44.59	10.2
Zm00001d052695_P016	Maize	nucleus	44.16	10.13
EES14166	Sorghum	nucleus	44.16	10.08
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	44.59	10.07
TraesCS7D01G265600.3	Wheat	nucleus	41.99	9.43
TraesCS7A01G264800.1	Wheat	nucleus	41.56	9.4
TraesCS7B01G162700.4	Wheat	nucleus, plastid	41.56	9.4
GSMUA_Achr6P08220_001	Banana	nucleus	38.96	8.99
HORVU7Hr1G055440.9	Barley	plastid	40.26	8.74
TraesCS4A01G143200.1	Wheat	plastid	31.6	7.44
Os11t0533500-01	Rice	nucleus	30.74	7.26
OQU83580	Sorghum	plastid	27.27	7.26
TraesCS4B01G162200.1	Wheat	nucleus	30.74	7.24
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	30.74	7.24
KXG21076	Sorghum	plastid	27.27	7.19
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	26.84	7.1
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	29.44	6.94
Zm00001d052666_P014	Maize	nucleus	27.27	6.83

Protein Annotations

MapMan:35.1	GO:A0A078IR77	UniProt:A0A078IR77	EnsemblPlants:CDY52391	ProteinID:CDY52391	ProteinID:CDY52391.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0006915	GO:GO:0007049	GO:GO:0008134
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0008285	GO:GO:0009058	GO:GO:0009987
GO:GO:0035189	GO:GO:0045892	GO:GO:0051726	GO:GO:2000134	EnsemblPlantsGene:GSBRNA2T00006835001	PANTHER:PTHR13742
PANTHER:PTHR13742:SF17	InterPro:RB1	InterPro:RB_fam	UniParc:UPI0004EDB8C0	SEG:seg	:

Description

BnaCnng22290DBnaCnng22290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IR77]

Coordinates

chrLK033082:-:76255..78364

Molecular Weight (calculated)

25633.9 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.846

Length

231 amino acids

Sequence
(BLAST)

001: MVTGVVPKGT VKKGDKDVDL IASLCKIYDA SEDELRATMD KTNNLIETIL KKKPSACQTD KLDNIDTDGL TYFEDLLDET SISTSLITLE KDYTDAVCNK
101: SELDERVFIN EEDSLLGSGS LSAGAVNITG VKRKIDSLSS PARTFISPLS PHKSPAAKTN SIGIRRRKTA EDEDEDGDED GNEDATNDEE KEGEAEASGS
201: NEREKERTKR ICIQLRLFPR RKPQMREKRT K

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.