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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68212
CDX73014
CDX77682 nucleus
CDX83546
CDX83731
CDX84824
CDX93852
CDX97806
CDX99756
CDY03201 nucleus
CDY08769 nucleus
CDY10749
CDY11089
CDY13580
CDY21916
CDY22079
CDY23988
CDY29658
CDY35175 nucleus
CDY37835 nucleus
CDY38963
CDY39435
CDY43422
CDY45968
CDY47130
CDY57605
CDY60144
CDY62942
CDY63053 nucleus
CDY64892
CDY66559
CDY69978 nucleus

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G24140.1 CDX83731 AT1G19980.1 21798944
AT3G24140.1 CDY43422 AT1G19980.1 21798944
AT3G24140.1 CDY57605 AT1G19980.1 21798944
AT3G24140.1 CDY62942 AT1G19980.1 21798944
AT3G24140.1 CDX93852 AT1G62990.1 21798944
AT3G24140.1 CDY45968 AT1G62990.1 21798944
AT3G24140.1 CDY64892 AT1G62990.1 21798944
AT3G24140.1 CDY66559 AT1G62990.1 21798944
AT3G24140.1 CDX68212 AT1G73790.1 21798944
AT3G24140.1 CDX73014 AT1G73790.1 21798944
AT3G24140.1 CDY11089 AT1G73790.1 21798944
AT3G24140.1 CDY60144 AT1G73790.1 21798944
AT3G24140.1 CDX84824 AT2G30590.1 21798944
AT3G24140.1 CDX97806 AT2G30590.1 21798944
AT3G24140.1 CDY10749 AT2G30590.1 21798944
AT3G24140.1 CDY23988 AT2G30590.1 21798944
AT3G24140.1 CDY29658 AT2G30590.1 21798944
AT3G24140.1 CDY47130 AT2G30590.1 21798944
AT3G24140.1 CDX83546 AT3G25710.1 21798944
AT3G24140.1 CDX99756 AT3G25710.1 21798944
AT3G24140.1 CDY13580 AT3G25710.1 21798944
AT3G24140.1 CDY21916 AT4G02770.1 21798944
AT3G24140.1 CDY22079 AT4G02770.1 21798944
AT3G24140.1 CDY38963 AT5G45600.1 21798944
AT3G24140.1 CDY39435 AT5G45600.1 21798944
AT3G24140.1 CDX77682 AT5G46690.1 17088607
AT3G24140.1 CDY03201 AT5G46690.1 17088607
AT3G24140.1 CDY35175 AT5G46690.1 17088607
AT3G24140.1 CDY63053 AT5G46690.1 17088607
AT3G24140.1 CDX77682 AT5G46690.1 21798944
AT3G24140.1 CDY03201 AT5G46690.1 21798944
AT3G24140.1 CDY35175 AT5G46690.1 21798944
AT3G24140.1 CDY63053 AT5G46690.1 21798944
AT3G24140.1 CDY08769 AT5G65640.1 17088607
AT3G24140.1 CDY37835 AT5G65640.1 17088607
AT3G24140.1 CDY69978 AT5G65640.1 17088607
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX85167 Canola nucleus 89.61 82.01
CDX92996 Canola nucleus 80.9 71.11
CDX94841 Canola nucleus 80.34 70.1
AT3G24140.1 Thale cress nucleus 78.09 67.15
CDY18083 Canola nucleus 65.45 60.68
CDY64587 Canola nucleus 61.52 59.03
GSMUA_Achr8P28400_001 Banana nucleus 32.58 58.29
GSMUA_Achr2P06030_001 Banana nucleus 46.07 51.41
Solyc05g053660.1.1 Tomato nucleus 51.97 48.3
VIT_05s0029g00050.t01 Wine grape nucleus 53.65 48.11
PGSC0003DMT400040761 Potato nucleus 52.25 47.69
KRH75571 Soybean nucleus 56.46 46.85
KRH71094 Soybean nucleus 56.74 45.29
Os05t0586300-00 Rice nucleus 44.1 40.57
TraesCS1D01G289400.1 Wheat nucleus 45.51 38.66
TraesCS1B01G300100.1 Wheat nucleus 45.22 38.61
TraesCS1A01G290800.1 Wheat nucleus 45.22 38.33
CDY18843 Canola nucleus 21.63 38.31
CDY24717 Canola nucleus 21.63 38.31
CDY08066 Canola nucleus 22.19 38.16
CDY58338 Canola nucleus 22.19 38.16
CDY05233 Canola nucleus 21.63 37.75
Zm00001d009715_P001 Maize nucleus 44.1 37.56
HORVU1Hr1G071330.3 Barley nucleus 45.79 37.39
KXG22636 Sorghum nucleus 45.22 35.23
CDY37634 Canola nucleus 22.19 34.65
CDY03201 Canola cytosol 16.57 32.6
CDY12528 Canola nucleus 23.6 29.79
CDY41479 Canola nucleus 23.6 29.37
CDY46652 Canola nucleus 23.03 29.08
CDY47059 Canola nucleus 28.37 28.94
CDY19692 Canola nucleus 28.65 28.9
CDY35175 Canola nucleus 23.6 28.57
CDY14397 Canola nucleus 28.37 28.45
CDY38734 Canola nucleus 28.09 28.33
CDX91680 Canola nucleus 22.75 28.32
CDY11386 Canola nucleus 22.19 28.32
CDY04811 Canola nucleus 23.88 28.24
CDY63053 Canola nucleus 25.56 28.09
CDX77682 Canola nucleus 25.56 28.09
CDY21365 Canola nucleus 23.6 27.91
CDX96201 Canola nucleus 27.25 27.56
CDY51710 Canola nucleus 23.88 27.33
CDX96382 Canola nucleus 24.72 27.08
CDY41734 Canola nucleus 22.75 26.91
CDY65719 Canola nucleus 22.75 26.91
CDX68274 Canola nucleus 24.16 26.54
CDY50447 Canola nucleus 24.16 26.54
CDY07143 Canola nucleus 23.03 26.45
CDX72877 Canola nucleus 24.16 26.22
CDY03650 Canola nucleus 23.88 26.07
CDX82171 Canola nucleus 23.88 26.07
CDY68483 Canola nucleus 23.31 25.94
CDX76598 Canola nucleus 22.47 25.4
CDY55926 Canola nucleus 23.03 25.39
CDY48013 Canola nucleus 22.19 24.84
CDY33966 Canola nucleus 21.07 24.83
CDY37820 Canola nucleus 15.17 24.77
CDY27521 Canola nucleus 21.35 24.52
CDX80049 Canola nucleus 20.79 23.64
CDY41561 Canola nucleus 20.51 23.4
CDY55929 Canola nucleus 20.79 22.16
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10GO:A0A078CKM0EnsemblPlants:CDX77460ProteinID:CDX77460ProteinID:CDX77460.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00128323001InterPro:HLH_DNA-bd_sf
InterPro:IPR011598InterPro:IPR036638PFAM:PF00010PFscan:PS50888PANTHER:PTHR11514PANTHER:PTHR11514:SF61
SMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EECB76InterPro:bHLH_domSEG:seg:
Description
BnaA07g05980D
Coordinates
chrLK031811:-:833989..835148
Molecular Weight (calculated)
40567.7 Da
IEP (calculated)
7.287
GRAVY (calculated)
-0.552
Length
356 amino acids
Sequence
(BLAST)
001: MIDHMFKRNL QKQKQSMPQQ QQLSPSGFGA TPTFDKMSFA DVMQFADFGP MLALNQTRSQ NDQETWMDPF YILKFPVFNG DHNQTHHIMS QEGGGCEGNI
101: SNVFLEEQDN QEEKNDKNSM QLRFIGEEED RENKNDTTKE VKKKRKRART SKTSEEVESQ RLAHIAVERN RRKQMNEHLC VLRSLMPGSY VQRRDQASIV
201: GGVIEFLSEL EQLLQCLESQ KRRRILGETN DIHGGDMTTT VITSSAITSS NPLIITGNVT ELEGGGGIQE ETAEKKSCLA DVEVKLLGFN AMIKILSRRR
301: PRQLIMTIAA LEDLHLSILH TNITTMEQTV LYSFNVKVSF INVYLSKKKV SLMFAL
Best Arabidopsis Sequence Match ( AT3G24140.1 )
(BLAST)
001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NISGSSNLGN IVFT
Arabidopsis Description
FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.