Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92996 | Canola | nucleus | 88.89 | 90.86 |
| Bra001929.1-P | Field mustard | nucleus | 88.89 | 90.86 |
| Bra028357.1-P | Field mustard | nucleus | 86.23 | 89.25 |
| CDX94841 | Canola | nucleus | 87.44 | 88.73 |
| CDX85167 | Canola | nucleus | 77.78 | 82.78 |
| CDX77460 | Canola | nucleus | 67.15 | 78.09 |
| Bra028351.1-P | Field mustard | nucleus | 65.7 | 75.56 |
| CDY18083 | Canola | nucleus | 69.57 | 75.0 |
| CDY64587 | Canola | nucleus | 66.43 | 74.12 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 33.33 | 69.35 |
| VIT_05s0029g00050.t01 | Wine grape | nucleus | 60.39 | 62.97 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 48.31 | 62.7 |
| Solyc05g053660.1.1 | Tomato | nucleus | 55.31 | 59.79 |
| PGSC0003DMT400040761 | Potato | nucleus | 55.56 | 58.97 |
| KRH75571 | Soybean | nucleus | 59.66 | 57.58 |
| KRH71094 | Soybean | nucleus | 59.66 | 55.38 |
| Os05t0586300-00 | Rice | nucleus | 45.89 | 49.1 |
| TraesCS1D01G289400.1 | Wheat | nucleus | 46.86 | 46.3 |
| TraesCS1B01G300100.1 | Wheat | nucleus | 46.62 | 46.28 |
| Zm00001d009715_P001 | Maize | nucleus | 46.62 | 46.17 |
| TraesCS1A01G290800.1 | Wheat | nucleus | 46.38 | 45.71 |
| HORVU1Hr1G071330.3 | Barley | nucleus | 45.65 | 43.35 |
| KXG22636 | Sorghum | nucleus | 47.1 | 42.67 |
| AT3G06120.1 | Thale cress | nucleus | 20.77 | 42.57 |
| AT1G72210.1 | Thale cress | nucleus | 24.64 | 31.88 |
| AT4G01460.2 | Thale cress | nucleus | 24.15 | 31.75 |
| AT5G46690.1 | Thale cress | nucleus | 24.15 | 30.58 |
| AT1G22490.2 | Thale cress | nucleus | 22.95 | 29.14 |
| AT5G53210.1 | Thale cress | nucleus | 25.6 | 29.12 |
| AT5G65320.1 | Thale cress | nucleus | 19.32 | 27.03 |
| AT2G46810.1 | Thale cress | nucleus | 23.43 | 26.15 |
| AT3G61950.1 | Thale cress | nucleus | 21.5 | 24.86 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:822000 | UniProt:A0A178VKX8 | ProteinID:AEE76862.1 | EMBL:AF488624 |
| EMBL:AK221324 | ArrayExpress:AT3G24140 | EnsemblPlantsGene:AT3G24140 | RefSeq:AT3G24140 | TAIR:AT3G24140 | RefSeq:AT3G24140-TAIR-G |
| EnsemblPlants:AT3G24140.1 | TAIR:AT3G24140.1 | Unigene:At.37586 | ProteinID:BAB01355.1 | EMBL:BT028961 | Symbol:FMA |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010052 | GO:GO:0010377 | GO:GO:0010444 |
| GO:GO:0016043 | GO:GO:0019538 | GO:GO:0030154 | GO:GO:0045597 | GO:GO:0045893 | GO:GO:0046983 |
| GO:GO:0051782 | GO:GO:0061086 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_189056.2 |
| ProteinID:OAP05472.1 | PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0000351 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF61 | UniProt:Q56YJ8 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0000196DF1 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
Coordinates
chr3:-:8715118..8718211
Molecular Weight (calculated)
46410.4 Da
IEP (calculated)
5.117
GRAVY (calculated)
-0.695
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NISGSSNLGN IVFT
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NISGSSNLGN IVFT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.