Factsheet for AT4G01460.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07143	Canola	nucleus	79.68	80.97
CDY51710	Canola	nucleus	79.37	80.39
Bra037414.1-P	Field mustard	nucleus	79.37	80.39
VIT_15s0048g02510.t01	Wine grape	nucleus	46.67	40.72
GSMUA_Achr11P...	Banana	nucleus	36.51	40.35
AT3G61950.1	Thale cress	nucleus	45.4	39.94
KRH47774	Soybean	nucleus	48.57	39.84
GSMUA_Achr5P20300_001	Banana	nucleus	36.51	39.38
KRH06347	Soybean	nucleus	47.62	37.69
AT3G06120.1	Thale cress	nucleus	23.81	37.13
AT2G46810.1	Thale cress	nucleus	42.86	36.39
HORVU4Hr1G084850.2	Barley	extracellular	34.29	35.64
TraesCS4B01G347100.1	Wheat	extracellular	33.65	35.33
TraesCS5A01G515800.1	Wheat	extracellular	33.97	35.31
GSMUA_Achr11P...	Banana	nucleus	36.83	35.15
Os03t0122100-00	Rice	mitochondrion, nucleus, plastid	34.6	35.05
TraesCS4D01G342000.1	Wheat	extracellular	33.33	34.65
Zm00001d027419_P001	Maize	nucleus	33.97	34.41
Zm00001d048478_P001	Maize	nucleus	34.92	33.95
AT1G72210.1	Thale cress	nucleus	34.29	33.75
OQU93358	Sorghum	nucleus	33.65	32.82
GSMUA_Achr8P12330_001	Banana	golgi, vacuole	36.83	31.69
AT5G46690.1	Thale cress	nucleus	32.7	31.5
AT5G65320.1	Thale cress	nucleus	26.98	28.72
AT1G22490.2	Thale cress	nucleus	28.89	27.91
AT3G24140.1	Thale cress	nucleus	31.75	24.15
AT5G53210.1	Thale cress	nucleus	24.76	21.43

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:828089	ProteinID:AAC62787.1	ProteinID:AEE82030.1	EMBL:AF488590
ProteinID:ANM67433.1	ArrayExpress:AT4G01460	EnsemblPlantsGene:AT4G01460	RefSeq:AT4G01460	TAIR:AT4G01460	RefSeq:AT4G01460-TAIR-G
EnsemblPlants:AT4G01460.2	EMBL:AY099780	EMBL:AY128881	Unigene:At.34425	ProteinID:CAB77716.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	RefSeq:NP_001329264.1	RefSeq:NP_192055.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF29	UniProt:Q9M128	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000009DF4A	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

BHLH57Transcription factor bHLH57 [Source:UniProtKB/Swiss-Prot;Acc:Q9M128]

Coordinates

chr4:+:620697..623000

Molecular Weight (calculated)

35308.9 Da

IEP (calculated)

6.269

GRAVY (calculated)

-0.553

Length

315 amino acids

Sequence
(BLAST)

001: MSGLMSFGEL EDQFGQISDT TMEEKIPFLQ MLQCIEHPFT TTEPNQFLQS LLQIQTLESK SCLTLETNIK RDPGQTDDPE KDPRTENGAV TVKEKRKRKR
101: TRAPKNKDEV ENQRMTHIAV ERNRRRQMNE HLNSLRSLMP PSFLQRGDQA SIVGGAIDFI KELEQLLQSL EAEKRKDGTD ETPKTASCSS SSSLACTNSS
201: ISSVSTTSEN GFTARFGGGD TTEVEATVIQ NHVSLKVRCK RGKRQILKAI VSIEELKLAI LHLTISSSFD FVIYSFNLKM EDGCKLGSAD EIATAVHQIF
301: EQINGEVMWS NLSRT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.