Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12528 | Canola | nucleus | 68.71 | 79.43 |
| CDY41479 | Canola | nucleus | 67.48 | 76.92 |
| CDY46652 | Canola | nucleus | 66.26 | 76.6 |
| Bra016377.1-P | Field mustard | nucleus | 70.55 | 76.16 |
| CDX91680 | Canola | nucleus | 66.56 | 75.87 |
| Bra040856.1-P | Field mustard | nucleus | 50.0 | 75.12 |
| CDY04811 | Canola | nucleus | 69.33 | 75.08 |
| CDY21365 | Canola | nucleus | 68.71 | 74.42 |
| Bra012329.1-P | Field mustard | nucleus | 67.79 | 72.94 |
| AT1G72210.1 | Thale cress | nucleus | 56.75 | 57.81 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 44.48 | 46.77 |
| KRH62289 | Soybean | nucleus | 44.17 | 44.44 |
| KRH16792 | Soybean | nucleus | 42.64 | 42.9 |
| KRH53000 | Soybean | nucleus | 43.87 | 42.81 |
| Solyc12g087850.1.1 | Tomato | nucleus | 20.55 | 41.36 |
| KRH72411 | Soybean | nucleus | 42.02 | 39.6 |
| PGSC0003DMT400005446 | Potato | nucleus | 41.1 | 38.84 |
| Solyc04g074810.2.1 | Tomato | extracellular | 41.1 | 37.75 |
| PGSC0003DMT400045820 | Potato | nucleus | 34.05 | 37.5 |
| AT5G65320.1 | Thale cress | nucleus | 30.37 | 33.45 |
| AT5G46690.1 | Thale cress | nucleus | 33.13 | 33.03 |
| AT4G01460.2 | Thale cress | nucleus | 27.91 | 28.89 |
| AT3G61950.1 | Thale cress | nucleus | 30.67 | 27.93 |
| AT3G06120.1 | Thale cress | nucleus | 16.87 | 27.23 |
| AT2G46810.1 | Thale cress | nucleus | 30.06 | 26.42 |
| AT3G24140.1 | Thale cress | nucleus | 29.14 | 22.95 |
| AT5G53210.1 | Thale cress | nucleus | 23.01 | 20.6 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:838855 | UniProt:A0A1P8ANU6 | ProteinID:ANM58298.1 | ArrayExpress:AT1G22490 |
| EnsemblPlantsGene:AT1G22490 | RefSeq:AT1G22490 | TAIR:AT1G22490 | RefSeq:AT1G22490-TAIR-G | EnsemblPlants:AT1G22490.2 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001320744.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0008487E66 | InterPro:bHLH_dom | SEG:seg |
Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
Coordinates
chr1:-:7938597..7940625
Molecular Weight (calculated)
37627.6 Da
IEP (calculated)
7.435
GRAVY (calculated)
-0.544
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVRTF STSHHYFVCF WGNHEIKVSN
301: DCVCGAYGFT LLIYFFVSYC WGEILD
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVRTF STSHHYFVCF WGNHEIKVSN
301: DCVCGAYGFT LLIYFFVSYC WGEILD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.