Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47059 | Canola | nucleus | 87.91 | 91.69 |
| CDY38734 | Canola | nucleus | 88.19 | 90.93 |
| Bra022638.1-P | Field mustard | nucleus | 87.09 | 90.57 |
| CDY19692 | Canola | nucleus | 87.64 | 90.37 |
| CDX96201 | Canola | nucleus | 87.36 | 90.34 |
| CDY14397 | Canola | nucleus | 87.36 | 89.58 |
| Bra029088.1-P | Field mustard | nucleus | 82.14 | 88.99 |
| Bra003073.1-P | Field mustard | nucleus | 84.62 | 71.13 |
| KRH64504 | Soybean | nucleus | 60.44 | 63.95 |
| KRH53438 | Soybean | nucleus | 60.44 | 63.04 |
| KRH18131 | Soybean | nucleus | 57.69 | 62.5 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 57.14 | 61.54 |
| KRH16521 | Soybean | nucleus | 55.49 | 61.03 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 47.25 | 60.78 |
| GSMUA_Achr10P... | Banana | nucleus | 42.31 | 59.0 |
| Solyc03g007410.2.1 | Tomato | nucleus | 53.57 | 58.38 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 48.63 | 56.91 |
| PGSC0003DMT400023497 | Potato | nucleus | 55.22 | 56.62 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 48.08 | 48.08 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 47.8 | 47.8 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 47.8 | 47.67 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 47.53 | 47.53 |
| AT3G06120.1 | Thale cress | nucleus | 26.37 | 47.52 |
| EER88428 | Sorghum | nucleus | 46.7 | 44.74 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 45.05 | 43.73 |
| Zm00001d046096_P001 | Maize | nucleus | 40.93 | 43.06 |
| EES06610 | Sorghum | nucleus | 46.98 | 42.96 |
| Zm00001d016095_P001 | Maize | nucleus | 45.88 | 42.49 |
| Os02t0257500-00 | Rice | nucleus | 45.6 | 40.0 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 42.86 | 39.49 |
| AT5G65320.1 | Thale cress | nucleus | 21.15 | 26.01 |
| AT3G24140.1 | Thale cress | nucleus | 29.12 | 25.6 |
| AT4G01460.2 | Thale cress | nucleus | 21.43 | 24.76 |
| AT1G72210.1 | Thale cress | nucleus | 21.7 | 24.69 |
| AT5G46690.1 | Thale cress | nucleus | 21.15 | 23.55 |
| AT1G22490.2 | Thale cress | nucleus | 20.6 | 23.01 |
| AT2G46810.1 | Thale cress | nucleus | 20.33 | 19.95 |
| AT3G61950.1 | Thale cress | nucleus | 19.51 | 19.83 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:835402 | UniProt:A0A178UF96 | ProteinID:AED96323.1 | EMBL:AJ630498 |
| ArrayExpress:AT5G53210 | EnsemblPlantsGene:AT5G53210 | RefSeq:AT5G53210 | TAIR:AT5G53210 | RefSeq:AT5G53210-TAIR-G | EnsemblPlants:AT5G53210.1 |
| TAIR:AT5G53210.1 | EMBL:AY568670 | ProteinID:BAB09783.1 | ncoils:Coil | EMBL:DQ868373 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0010374 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_200133.2 |
| ProteinID:OAO91772.1 | PFAM:PF00010 | PO:PO:0000017 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0006016 | PO:PO:0007616 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009052 | PO:PO:0025022 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF58 | UniProt:Q700C7 | SMART:SM00353 | Symbol:SPCH | SUPFAM:SSF47459 | UniParc:UPI000035297E |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
Coordinates
chr5:-:21586219..21589255
Molecular Weight (calculated)
40171.6 Da
IEP (calculated)
4.983
GRAVY (calculated)
-0.513
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.