Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47059 | Canola | nucleus | 97.17 | 98.28 |
| Bra029088.1-P | Field mustard | nucleus | 91.22 | 95.83 |
| AT5G53210.1 | Thale cress | nucleus | 90.93 | 88.19 |
| CDY19692 | Canola | nucleus | 88.1 | 88.1 |
| CDY14397 | Canola | nucleus | 88.1 | 87.61 |
| CDX96201 | Canola | nucleus | 84.14 | 84.38 |
| KRH64504 | Soybean | nucleus | 60.06 | 61.63 |
| KRH18131 | Soybean | nucleus | 58.64 | 61.61 |
| KRH53438 | Soybean | nucleus | 60.62 | 61.32 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 57.79 | 60.35 |
| KRH16521 | Soybean | nucleus | 55.81 | 59.52 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 46.46 | 57.95 |
| GSMUA_Achr10P... | Banana | nucleus | 42.78 | 57.85 |
| Solyc03g007410.2.1 | Tomato | nucleus | 54.39 | 57.48 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 49.01 | 55.63 |
| PGSC0003DMT400023497 | Potato | nucleus | 55.81 | 55.49 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 49.29 | 47.8 |
| CDY24717 | Canola | nucleus | 27.2 | 47.76 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 49.01 | 47.53 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 49.01 | 47.4 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 48.73 | 47.25 |
| CDY05233 | Canola | nucleus | 27.2 | 47.06 |
| CDY18843 | Canola | nucleus | 26.63 | 46.77 |
| CDY08066 | Canola | nucleus | 27.2 | 46.38 |
| CDY58338 | Canola | nucleus | 27.2 | 46.38 |
| EER88428 | Sorghum | nucleus | 47.88 | 44.47 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 45.33 | 42.67 |
| Zm00001d046096_P001 | Maize | nucleus | 41.64 | 42.49 |
| EES06610 | Sorghum | nucleus | 47.31 | 41.96 |
| Zm00001d016095_P001 | Maize | nucleus | 45.89 | 41.22 |
| Os02t0257500-00 | Rice | nucleus | 45.89 | 39.04 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 43.34 | 38.73 |
| CDY37634 | Canola | nucleus | 21.53 | 33.33 |
| CDX77460 | Canola | nucleus | 28.33 | 28.09 |
| CDX85167 | Canola | nucleus | 30.88 | 28.02 |
| CDY41479 | Canola | nucleus | 22.38 | 27.62 |
| CDX92996 | Canola | nucleus | 31.44 | 27.41 |
| CDY51710 | Canola | nucleus | 23.8 | 27.01 |
| CDX94841 | Canola | nucleus | 31.16 | 26.96 |
| CDX91680 | Canola | nucleus | 21.53 | 26.57 |
| CDY03201 | Canola | cytosol | 13.6 | 26.52 |
| CDY07143 | Canola | nucleus | 23.23 | 26.45 |
| CDY37820 | Canola | nucleus | 15.86 | 25.69 |
| CDY04811 | Canola | nucleus | 21.81 | 25.58 |
| CDY21365 | Canola | nucleus | 21.81 | 25.58 |
| CDY12528 | Canola | nucleus | 20.4 | 25.53 |
| CDY46652 | Canola | nucleus | 20.4 | 25.53 |
| CDY11386 | Canola | nucleus | 20.11 | 25.45 |
| CDY18083 | Canola | nucleus | 27.2 | 25.0 |
| CDY64587 | Canola | nucleus | 25.78 | 24.53 |
| CDX80049 | Canola | nucleus | 21.25 | 23.96 |
| CDY33966 | Canola | nucleus | 20.4 | 23.84 |
| CDY35175 | Canola | nucleus | 19.83 | 23.81 |
| CDX72877 | Canola | nucleus | 22.1 | 23.78 |
| CDY41561 | Canola | nucleus | 20.96 | 23.72 |
| CDY03650 | Canola | nucleus | 21.81 | 23.62 |
| CDX82171 | Canola | nucleus | 21.81 | 23.62 |
| CDY27521 | Canola | nucleus | 20.68 | 23.55 |
| CDX77682 | Canola | nucleus | 21.53 | 23.46 |
| CDX68274 | Canola | nucleus | 21.53 | 23.46 |
| CDY63053 | Canola | nucleus | 21.53 | 23.46 |
| CDY50447 | Canola | nucleus | 21.53 | 23.46 |
| CDX96382 | Canola | nucleus | 21.53 | 23.38 |
| CDY48013 | Canola | nucleus | 20.68 | 22.96 |
| CDY65719 | Canola | nucleus | 19.55 | 22.92 |
| CDY41734 | Canola | nucleus | 19.26 | 22.59 |
| CDX76598 | Canola | nucleus | 19.83 | 22.22 |
| CDY68483 | Canola | nucleus | 19.55 | 21.56 |
| CDY55926 | Canola | nucleus | 19.55 | 21.36 |
| CDY55929 | Canola | nucleus | 17.56 | 18.56 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078HMZ4 | UniProt:A0A078HMZ4 | EnsemblPlants:CDY38734 | ProteinID:CDY38734 |
| ProteinID:CDY38734.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00066520001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC7C7A | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g15150DBnaC03g15150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMZ4]
Coordinates
chrLK032431:-:153296..155342
Molecular Weight (calculated)
38825.0 Da
IEP (calculated)
4.784
GRAVY (calculated)
-0.469
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDFLEECEF VDTSLAEDDL FAILEGLEGA GEISPTAAST PKDGATNSKE LVTDPNYETS SPKKKRKRLE TEKEDEEEED GEEEEEEEEN KQQKMSHVTV
101: ERNRRKQMNE HLTVLRSLMP CFYVKRGDQA SIIGGVVEYI SELQQVLQSL EAKKQRKTYA EVLSPRLVPS PRPSPPVLSP RKPPLSPRIS HHHLLLPPIS
201: PRTPQPTSPY LAHAPQLPLI PQPPLRSYSS LAGGSSLGDP PPYSPASSSS SPSVSSIRES SVINELVANS KSALADVEVK FSGANVLLKT VSHKIPGQVL
301: KIIAALEDLA LEILQVNINT VNETMLNSFT IKIGIECQLS AEELAQQIQQ TFC
101: ERNRRKQMNE HLTVLRSLMP CFYVKRGDQA SIIGGVVEYI SELQQVLQSL EAKKQRKTYA EVLSPRLVPS PRPSPPVLSP RKPPLSPRIS HHHLLLPPIS
201: PRTPQPTSPY LAHAPQLPLI PQPPLRSYSS LAGGSSLGDP PPYSPASSSS SPSVSSIRES SVINELVANS KSALADVEVK FSGANVLLKT VSHKIPGQVL
301: KIIAALEDLA LEILQVNINT VNETMLNSFT IKIGIECQLS AEELAQQIQQ TFC
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.