Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72877 | Canola | nucleus | 99.56 | 69.21 |
| CDX96382 | Canola | nucleus | 93.86 | 65.85 |
| AT1G72210.1 | Thale cress | nucleus | 85.96 | 61.25 |
| CDX68274 | Canola | nucleus | 84.65 | 59.57 |
| CDY50447 | Canola | nucleus | 83.77 | 58.95 |
| CDX82171 | Canola | nucleus | 80.7 | 56.44 |
| CDY03650 | Canola | nucleus | 80.7 | 56.44 |
| CDY41479 | Canola | nucleus | 68.86 | 54.9 |
| CDX91680 | Canola | nucleus | 68.42 | 54.55 |
| CDY21365 | Canola | nucleus | 67.98 | 51.49 |
| CDY04811 | Canola | nucleus | 67.54 | 51.16 |
| Solyc12g087850.1.1 | Tomato | nucleus | 35.53 | 50.0 |
| CDY12528 | Canola | nucleus | 59.21 | 47.87 |
| CDY46652 | Canola | nucleus | 58.33 | 47.16 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 61.84 | 45.48 |
| KRH62289 | Soybean | nucleus | 59.21 | 41.67 |
| KRH16792 | Soybean | nucleus | 58.77 | 41.36 |
| PGSC0003DMT400005446 | Potato | nucleus | 60.96 | 40.29 |
| KRH53000 | Soybean | nucleus | 58.77 | 40.12 |
| Solyc04g074810.2.1 | Tomato | extracellular | 60.53 | 38.87 |
| PGSC0003DMT400045820 | Potato | nucleus | 50.44 | 38.85 |
| KRH72411 | Soybean | nucleus | 58.33 | 38.44 |
| CDY03201 | Canola | cytosol | 28.95 | 36.46 |
| CDY37820 | Canola | nucleus | 34.65 | 36.24 |
| CDY65719 | Canola | nucleus | 46.93 | 35.55 |
| CDY41734 | Canola | nucleus | 46.49 | 35.22 |
| CDY33966 | Canola | nucleus | 44.3 | 33.44 |
| CDY63053 | Canola | nucleus | 46.49 | 32.72 |
| CDX77682 | Canola | nucleus | 46.05 | 32.41 |
| CDY51710 | Canola | nucleus | 42.11 | 30.87 |
| CDY11386 | Canola | nucleus | 37.28 | 30.47 |
| CDY24717 | Canola | nucleus | 26.32 | 29.85 |
| CDY07143 | Canola | nucleus | 40.35 | 29.68 |
| CDY35175 | Canola | nucleus | 37.72 | 29.25 |
| CDY05233 | Canola | nucleus | 25.88 | 28.92 |
| CDY08066 | Canola | nucleus | 25.88 | 28.5 |
| CDY58338 | Canola | nucleus | 25.88 | 28.5 |
| CDY41561 | Canola | nucleus | 38.6 | 28.21 |
| CDY48013 | Canola | nucleus | 39.04 | 27.99 |
| CDY18843 | Canola | nucleus | 24.56 | 27.86 |
| CDX80049 | Canola | nucleus | 38.16 | 27.8 |
| CDY27521 | Canola | nucleus | 36.4 | 26.77 |
| CDX76598 | Canola | nucleus | 36.84 | 26.67 |
| CDY68483 | Canola | nucleus | 36.4 | 25.94 |
| CDY55926 | Canola | nucleus | 35.96 | 25.39 |
| CDY55929 | Canola | nucleus | 34.21 | 23.35 |
| CDX85167 | Canola | nucleus | 38.16 | 22.36 |
| CDX77460 | Canola | nucleus | 34.65 | 22.19 |
| CDY47059 | Canola | nucleus | 33.77 | 22.06 |
| CDY19692 | Canola | nucleus | 33.77 | 21.81 |
| CDX92996 | Canola | nucleus | 38.6 | 21.73 |
| CDY14397 | Canola | nucleus | 33.77 | 21.69 |
| CDY38734 | Canola | nucleus | 33.33 | 21.53 |
| CDX94841 | Canola | nucleus | 38.16 | 21.32 |
| CDX96201 | Canola | nucleus | 30.7 | 19.89 |
| CDY64587 | Canola | nucleus | 32.02 | 19.68 |
| CDY18083 | Canola | nucleus | 32.89 | 19.53 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078HK24 | UniProt:A0A078HK24 | EnsemblPlants:CDY37634 | ProteinID:CDY37634 |
| ProteinID:CDY37634.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00064294001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF31 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE029F | InterPro:bHLH_dom | SEG:seg |
Description
BnaCnng08490DBnaCnng08490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HK24]
Coordinates
chrLK032404:-:299736..301831
Molecular Weight (calculated)
25173.9 Da
IEP (calculated)
8.991
GRAVY (calculated)
-0.474
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATGGERRK RRRTRSNKNK EEIENQRMTH IAVERNRRKQ MNEYLAVLRS LMPPCYSQRG DQASIVGGAI NYLKELQHQL QSMEPPVKIT ATEDTGATAA
101: SAGDQNNTIS ASSSGPFSDF FAFPQYSSRP SSSSVAEGTA EIEVTMVESH ASVKILAKKR PKQLLKLVAS IQSLRLTLLH LNVTTHDDSV LYSISLKVEE
201: GSQLNTVEDI AAAVNQILMR IEEESPLS
101: SAGDQNNTIS ASSSGPFSDF FAFPQYSSRP SSSSVAEGTA EIEVTMVESH ASVKILAKKR PKQLLKLVAS IQSLRLTLLH LNVTTHDDSV LYSISLKVEE
201: GSQLNTVEDI AAAVNQILMR IEEESPLS
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.