Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022638.1-P | Field mustard | nucleus | 97.44 | 98.0 |
| AT5G53210.1 | Thale cress | nucleus | 90.34 | 87.36 |
| CDY47059 | Canola | nucleus | 83.52 | 84.24 |
| CDY38734 | Canola | nucleus | 84.38 | 84.14 |
| CDY14397 | Canola | nucleus | 84.66 | 83.94 |
| CDY19692 | Canola | nucleus | 83.24 | 83.0 |
| KRH64504 | Soybean | nucleus | 56.25 | 57.56 |
| GSMUA_Achr10P... | Banana | nucleus | 42.33 | 57.09 |
| KRH53438 | Soybean | nucleus | 56.53 | 57.02 |
| KRH18131 | Soybean | nucleus | 53.98 | 56.55 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 54.26 | 56.51 |
| KRH16521 | Soybean | nucleus | 51.7 | 54.98 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 42.61 | 53.0 |
| Solyc03g007410.2.1 | Tomato | nucleus | 48.58 | 51.2 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 44.89 | 50.8 |
| PGSC0003DMT400023497 | Potato | nucleus | 50.28 | 49.86 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 44.6 | 43.13 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 44.6 | 43.13 |
| Zm00001d046096_P001 | Maize | nucleus | 42.33 | 43.06 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 44.6 | 43.01 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 44.32 | 42.86 |
| CDY18843 | Canola | nucleus | 24.43 | 42.79 |
| CDY24717 | Canola | nucleus | 24.43 | 42.79 |
| CDY08066 | Canola | nucleus | 25.0 | 42.51 |
| CDY58338 | Canola | nucleus | 25.0 | 42.51 |
| CDY05233 | Canola | nucleus | 24.43 | 42.16 |
| EER88428 | Sorghum | nucleus | 43.18 | 40.0 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 43.47 | 38.73 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 41.19 | 38.67 |
| EES06610 | Sorghum | nucleus | 43.47 | 38.44 |
| Zm00001d016095_P001 | Maize | nucleus | 42.33 | 37.91 |
| Os02t0257500-00 | Rice | nucleus | 41.19 | 34.94 |
| CDY37634 | Canola | nucleus | 19.89 | 30.7 |
| CDX77460 | Canola | nucleus | 27.56 | 27.25 |
| CDY41479 | Canola | nucleus | 21.31 | 26.22 |
| CDY03201 | Canola | cytosol | 13.35 | 25.97 |
| CDY12528 | Canola | nucleus | 20.45 | 25.53 |
| CDX91680 | Canola | nucleus | 20.74 | 25.52 |
| CDX85167 | Canola | nucleus | 27.84 | 25.19 |
| CDX92996 | Canola | nucleus | 28.69 | 24.94 |
| CDY46652 | Canola | nucleus | 19.89 | 24.82 |
| CDY37820 | Canola | nucleus | 15.34 | 24.77 |
| CDX94841 | Canola | nucleus | 28.41 | 24.51 |
| CDY18083 | Canola | nucleus | 26.7 | 24.48 |
| CDY21365 | Canola | nucleus | 20.74 | 24.25 |
| CDY04811 | Canola | nucleus | 20.74 | 24.25 |
| CDY51710 | Canola | nucleus | 21.31 | 24.12 |
| CDY64587 | Canola | nucleus | 25.28 | 23.99 |
| CDY07143 | Canola | nucleus | 21.02 | 23.87 |
| CDY35175 | Canola | nucleus | 19.89 | 23.81 |
| CDY11386 | Canola | nucleus | 18.75 | 23.66 |
| CDX72877 | Canola | nucleus | 21.02 | 22.56 |
| CDX68274 | Canola | nucleus | 20.45 | 22.22 |
| CDX77682 | Canola | nucleus | 20.45 | 22.22 |
| CDY50447 | Canola | nucleus | 20.45 | 22.22 |
| CDY63053 | Canola | nucleus | 20.45 | 22.22 |
| CDX96382 | Canola | nucleus | 20.45 | 22.15 |
| CDY33966 | Canola | nucleus | 18.75 | 21.85 |
| CDY41561 | Canola | nucleus | 19.32 | 21.79 |
| CDY03650 | Canola | nucleus | 20.17 | 21.78 |
| CDX82171 | Canola | nucleus | 20.17 | 21.78 |
| CDX80049 | Canola | nucleus | 19.32 | 21.73 |
| CDY27521 | Canola | nucleus | 19.03 | 21.61 |
| CDY41734 | Canola | nucleus | 18.18 | 21.26 |
| CDY65719 | Canola | nucleus | 18.18 | 21.26 |
| CDX76598 | Canola | nucleus | 18.75 | 20.95 |
| CDY48013 | Canola | nucleus | 18.47 | 20.44 |
| CDY68483 | Canola | nucleus | 18.47 | 20.31 |
| CDY55926 | Canola | nucleus | 18.47 | 20.12 |
| CDY55929 | Canola | nucleus | 16.19 | 17.07 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078E4H1 | EnsemblPlants:CDX96201 | ProteinID:CDX96201 | ProteinID:CDX96201.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00102285001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF58 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE0C50 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC02g14500D
Coordinates
chrLK031893:-:573245..574646
Molecular Weight (calculated)
38862.9 Da
IEP (calculated)
5.773
GRAVY (calculated)
-0.587
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEIISDFLE ECEFVDTSLA GDDLFAILES LEGAGEISST PASTPRDGIA SSNELVKDQI HETSSPKRNK RKRLETDKEE DEEEDGEGEG EGEEDNKQDG
101: EQKMSHVTVE RNRRKQMNEH LTVLRSLMPC FYVKRGDQAS IIGGVVEYIS ELQQVLQSLE AKKQRKTYAE VLSPRLVSSP RPSPPVLSPR KPPLSPRINH
201: LQIHHHLLPP ISPRTPQPTS PYRAHPPQLP LIPQPPLRSY SSLASCSTLG DPPPYSPASS SSSPSVSSNH ESSMINELVA NSKSALADVE VKFSGANVLL
301: KTVSHKIPGQ VMKIIAALED LALEILQVNI NSVDETMLNS FTIKVRKNNH PH
101: EQKMSHVTVE RNRRKQMNEH LTVLRSLMPC FYVKRGDQAS IIGGVVEYIS ELQQVLQSLE AKKQRKTYAE VLSPRLVSSP RPSPPVLSPR KPPLSPRINH
201: LQIHHHLLPP ISPRTPQPTS PYRAHPPQLP LIPQPPLRSY SSLASCSTLG DPPPYSPASS SSSPSVSSNH ESSMINELVA NSKSALADVE VKFSGANVLL
301: KTVSHKIPGQ VMKIIAALED LALEILQVNI NSVDETMLNS FTIKVRKNNH PH
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKVRTNNHP N
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKVRTNNHP N
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.