Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008017.1-P | Field mustard | nucleus | 96.32 | 96.32 |
| CDY03650 | Canola | nucleus | 96.32 | 96.32 |
| CDY37634 | Canola | nucleus | 56.44 | 80.7 |
| CDY50447 | Canola | nucleus | 79.45 | 79.94 |
| CDX68274 | Canola | nucleus | 79.14 | 79.63 |
| AT1G72210.1 | Thale cress | nucleus | 76.69 | 78.12 |
| CDX96382 | Canola | nucleus | 76.99 | 77.23 |
| CDX72877 | Canola | nucleus | 77.3 | 76.83 |
| CDY41479 | Canola | nucleus | 54.6 | 62.24 |
| CDX91680 | Canola | nucleus | 53.68 | 61.19 |
| CDY04811 | Canola | nucleus | 56.13 | 60.8 |
| CDY21365 | Canola | nucleus | 55.83 | 60.47 |
| CDY12528 | Canola | nucleus | 51.84 | 59.93 |
| CDY46652 | Canola | nucleus | 50.61 | 58.51 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 50.92 | 53.55 |
| Solyc12g087850.1.1 | Tomato | nucleus | 24.23 | 48.77 |
| KRH62289 | Soybean | nucleus | 48.16 | 48.46 |
| KRH16792 | Soybean | nucleus | 47.24 | 47.53 |
| KRH53000 | Soybean | nucleus | 47.85 | 46.71 |
| KRH72411 | Soybean | nucleus | 47.55 | 44.8 |
| PGSC0003DMT400005446 | Potato | nucleus | 46.63 | 44.06 |
| PGSC0003DMT400045820 | Potato | nucleus | 39.26 | 43.24 |
| Solyc04g074810.2.1 | Tomato | extracellular | 46.32 | 42.54 |
| CDY65719 | Canola | nucleus | 34.97 | 37.87 |
| CDY41734 | Canola | nucleus | 34.66 | 37.54 |
| CDY37820 | Canola | nucleus | 24.54 | 36.7 |
| CDY63053 | Canola | nucleus | 35.28 | 35.49 |
| CDY03201 | Canola | cytosol | 19.63 | 35.36 |
| CDX77682 | Canola | nucleus | 34.97 | 35.19 |
| CDY11386 | Canola | nucleus | 28.53 | 33.33 |
| CDY35175 | Canola | nucleus | 30.06 | 33.33 |
| CDY33966 | Canola | nucleus | 30.67 | 33.11 |
| CDY51710 | Canola | nucleus | 30.37 | 31.83 |
| CDY07143 | Canola | nucleus | 29.45 | 30.97 |
| CDY41561 | Canola | nucleus | 28.53 | 29.81 |
| CDY48013 | Canola | nucleus | 28.83 | 29.56 |
| CDX76598 | Canola | nucleus | 28.53 | 29.52 |
| CDX80049 | Canola | nucleus | 28.22 | 29.39 |
| CDY68483 | Canola | nucleus | 28.22 | 28.75 |
| CDY27521 | Canola | nucleus | 26.99 | 28.39 |
| CDY55926 | Canola | nucleus | 27.61 | 27.86 |
| CDY24717 | Canola | nucleus | 17.18 | 27.86 |
| CDY58338 | Canola | nucleus | 17.18 | 27.05 |
| CDY08066 | Canola | nucleus | 17.18 | 27.05 |
| CDY05233 | Canola | nucleus | 16.87 | 26.96 |
| CDY18843 | Canola | nucleus | 16.26 | 26.37 |
| CDY55929 | Canola | nucleus | 25.46 | 24.85 |
| CDX85167 | Canola | nucleus | 29.14 | 24.42 |
| CDX77460 | Canola | nucleus | 26.07 | 23.88 |
| CDX92996 | Canola | nucleus | 29.14 | 23.46 |
| CDX94841 | Canola | nucleus | 28.53 | 22.79 |
| CDY19692 | Canola | nucleus | 24.23 | 22.38 |
| CDY47059 | Canola | nucleus | 23.93 | 22.35 |
| CDY14397 | Canola | nucleus | 24.23 | 22.25 |
| CDY18083 | Canola | nucleus | 25.77 | 21.88 |
| CDY38734 | Canola | nucleus | 23.62 | 21.81 |
| CDY64587 | Canola | nucleus | 24.23 | 21.29 |
| CDX96201 | Canola | nucleus | 21.78 | 20.17 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078CYC3 | InterPro:ACT_dom | EnsemblPlants:CDX82171 | ProteinID:CDX82171 |
| ProteinID:CDX82171.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00137238001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR002912 | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PFscan:PS51671 | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE2BC9 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaC02g21190D
Coordinates
chrLK031827:-:1527337..1529551
Molecular Weight (calculated)
36570.9 Da
IEP (calculated)
5.474
GRAVY (calculated)
-0.630
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVVYPQ DPFSLISCKD FQFHDFYFQQ EDNQDRLDTK NNIKLGQEQR QGLPRINYNG KSGDTFTNDD YNYNDQEEDL QWPRDDPLYG SALDQPPPSD
101: VAAGGGRRKR RRRTKSSKNK EEIENQRMTH IAVERNRRKQ MNDYLAVLRS LMPPSYAQRG DQASIVAGAI NYLKELEHHL QSIEPPLKSA TVPVDTGSAA
201: AAADQINTIA ASSLGQFSEF FAFPQYLSRP SSSSVAEGMA EIEVTMVESH ASVKILAKKR PKQLLKLAAS IQNLKLTVLH LNVTTCDDSV LYSISLKVEE
301: GSQLNTVEDI AAGMNQILRR IEEESS
101: VAAGGGRRKR RRRTKSSKNK EEIENQRMTH IAVERNRRKQ MNDYLAVLRS LMPPSYAQRG DQASIVAGAI NYLKELEHHL QSIEPPLKSA TVPVDTGSAA
201: AAADQINTIA ASSLGQFSEF FAFPQYLSRP SSSSVAEGMA EIEVTMVESH ASVKILAKKR PKQLLKLAAS IQNLKLTVLH LNVTTCDDSV LYSISLKVEE
301: GSQLNTVEDI AAGMNQILRR IEEESS
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.