Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g087850.1.1 | Tomato | nucleus | 43.92 | 80.25 |
| CDY37634 | Canola | nucleus | 38.85 | 50.44 |
| PGSC0003DMT400005446 | Potato | nucleus | 57.77 | 49.57 |
| Bra040856.1-P | Field mustard | nucleus | 35.81 | 48.85 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 48.65 | 46.45 |
| KRH62289 | Soybean | nucleus | 48.65 | 44.44 |
| KRH16792 | Soybean | nucleus | 48.65 | 44.44 |
| CDY41479 | Canola | nucleus | 42.23 | 43.71 |
| KRH53000 | Soybean | nucleus | 48.31 | 42.81 |
| CDX91680 | Canola | nucleus | 41.22 | 42.66 |
| Bra016377.1-P | Field mustard | nucleus | 42.23 | 41.39 |
| KRH72411 | Soybean | nucleus | 48.31 | 41.33 |
| AT1G72210.1 | Thale cress | nucleus | 44.59 | 41.25 |
| CDX96382 | Canola | nucleus | 45.27 | 41.23 |
| Bra016080.1-P | Field mustard | nucleus | 45.27 | 41.23 |
| CDX68274 | Canola | nucleus | 43.92 | 40.12 |
| Bra003886.1-P | Field mustard | nucleus | 43.92 | 40.12 |
| CDY50447 | Canola | nucleus | 43.92 | 40.12 |
| CDY04811 | Canola | nucleus | 40.54 | 39.87 |
| CDX72877 | Canola | nucleus | 43.92 | 39.63 |
| CDY21365 | Canola | nucleus | 40.2 | 39.53 |
| Bra008017.1-P | Field mustard | nucleus | 43.24 | 39.26 |
| CDX82171 | Canola | nucleus | 43.24 | 39.26 |
| CDY03650 | Canola | nucleus | 42.91 | 38.96 |
| Bra012329.1-P | Field mustard | nucleus | 39.86 | 38.94 |
| PGSC0003DMT400041644 | Potato | nucleus | 30.74 | 38.4 |
| CDY12528 | Canola | nucleus | 35.14 | 36.88 |
| CDY46652 | Canola | nucleus | 34.46 | 36.17 |
| PGSC0003DMT400045210 | Potato | nucleus | 39.86 | 35.76 |
| AT1G22490.2 | Thale cress | nucleus | 37.5 | 34.05 |
| PGSC0003DMT400073574 | Potato | nucleus | 38.51 | 33.83 |
| PGSC0003DMT400076223 | Potato | nucleus | 28.72 | 29.82 |
| PGSC0003DMT400040761 | Potato | nucleus | 30.74 | 23.33 |
| PGSC0003DMT400023497 | Potato | nucleus | 25.34 | 21.13 |
Protein Annotations
| EntrezGene:102592853 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1BI92 |
| PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400017766 | PGSC:PGSC0003DMG400017766 | EnsemblPlants:PGSC0003DMT400045820 | PFscan:PS50888 | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002952722 | RefSeq:XP_006360298.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017766]
Coordinates
chr12:-:55580154..55582305
Molecular Weight (calculated)
33901.5 Da
IEP (calculated)
7.392
GRAVY (calculated)
-0.382
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MALETVVYPQ KQYNGYVCKE FYGYEEQESS IILDNNWKYT SSCNYSMMQN QVKLGDCNIV EENSNNMLFL EGSSANSNSL RCCTKKRKRT CNNKDQRMIH
101: IAVERNRRKQ MNDYLTILRS LIPSSYVQRA DQASIIGGAI NFVKELEHNL QTLQAQKTLI SQLEKSDISS SPFFADFFSF PRYSNCSCES SVAVEKSRPL
201: LMSHDIQVNL VESHVNLKIV SKRRPKQLMK IVVGLQCLWL TILHLNVTTV HDQIVLYSIS TKLEEGCQLT TVEEISHAVN QLLDRIQEEE ATSSSN
101: IAVERNRRKQ MNDYLTILRS LIPSSYVQRA DQASIIGGAI NFVKELEHNL QTLQAQKTLI SQLEKSDISS SPFFADFFSF PRYSNCSCES SVAVEKSRPL
201: LMSHDIQVNL VESHVNLKIV SKRRPKQLMK IVVGLQCLWL TILHLNVTTV HDQIVLYSIS TKLEEGCQLT TVEEISHAVN QLLDRIQEEE ATSSSN
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.