Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0123100-01 | |
| Os03t0146300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G37630.1 | Os03t0146300-01 | AT2G27960.1 | 20706207 |
| AT4G37630.1 | Os03t0146300-01 | AT2G27970.1 | 20706207 |
| AT4G37630.1 | Os02t0123100-01 | AT3G48750.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G080500.1 | Wheat | nucleus | 63.03 | 70.54 |
| TraesCS4A01G234600.1 | Wheat | cytosol | 62.23 | 69.44 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 61.7 | 68.84 |
| EER91226 | Sorghum | nucleus | 60.37 | 61.35 |
| Zm00001d013728_P001 | Maize | cytosol | 58.78 | 60.55 |
| Zm00001d033330_P001 | Maize | nucleus | 56.91 | 60.45 |
| HORVU4Hr1G013700.2 | Barley | plastid | 61.7 | 58.73 |
| Os12t0588800-01 | Rice | nucleus | 53.99 | 55.62 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 34.57 | 40.62 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 29.79 | 35.33 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 26.06 | 35.25 |
| GSMUA_Achr10P... | Banana | nucleus | 26.6 | 34.97 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 28.72 | 33.96 |
| KRH61407 | Soybean | nucleus | 27.39 | 33.01 |
| KRH52092 | Soybean | nucleus | 27.39 | 32.8 |
| Os03t0203800-01 | Rice | nucleus | 30.05 | 32.75 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 28.19 | 32.12 |
| KRH77118 | Soybean | nucleus | 25.27 | 28.61 |
| Os09t0382300-00 | Rice | nucleus | 23.4 | 28.57 |
| KRH28363 | Soybean | nucleus | 25.0 | 28.4 |
| Os03t0392000-00 | Rice | cytosol, nucleus, plastid | 18.35 | 28.05 |
| AT4G37630.1 | Thale cress | nucleus | 23.14 | 26.93 |
| CDX72643 | Canola | nucleus | 24.2 | 26.76 |
| CDY29570 | Canola | nucleus | 23.67 | 26.65 |
| Bra017840.1-P | Field mustard | nucleus | 23.94 | 26.39 |
| Os09t0111100-01 | Rice | cytosol | 25.53 | 26.37 |
| Os09t0466100-01 | Rice | nucleus | 23.94 | 25.28 |
| Os07t0620800-01 | Rice | nucleus | 22.87 | 24.16 |
| Os08t0479300-01 | Rice | nucleus | 24.2 | 23.76 |
| Os06t0236600-00 | Rice | nucleus | 22.61 | 23.42 |
| Os07t0556000-01 | Rice | cytosol | 18.35 | 21.56 |
| Os11t0706801-00 | Rice | nucleus | 17.29 | 20.31 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | UniProt:A0A0P0W081 | ProteinID:BAS85283.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 | EnsemblPlantsGene:Os03g0617500 | EnsemblPlants:Os03t0617500-01 |
| PFAM:PF00134 | PFAM:PF02984 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF225 | SMART:SM00385 | SUPFAM:SSF47954 |
| UniParc:UPI000393B476 | SEG:seg | : | : | : | : |
Description
CYCLIN-D5-2Cyclin, C-terminal domain containing protein. (Os03t0617500-01);Similar to Cyclin-D5-1. (Os03t0617500-02)
Coordinates
chr3:-:23410223..23412753
Molecular Weight (calculated)
39582.4 Da
IEP (calculated)
4.545
GRAVY (calculated)
0.023
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: LGGRTVVGLM EAEDEYSAGC SFSLMCQEDS TDLDDDGGGG GCFAGDGRAD LLLVYNAAAA ADDEDEEEVE EYMDHLVSKE SSFCSSSSST SSSSCCFSDA
101: GGESAAAAAP MDWFALARRA TVKWILETRG CFGFCHRTAY LAIAYFDRFC LRRCIDRSVM PWAARLLAVA CVSLAAKMEE YRAPALSEFR AGVGDDGYEF
201: SCVCIRRMEL LVLSTLDWRM AAVTPFDYLP CLSSRLRRHV GGGGGAGASA ALIFSAAEAA SVLDHRPSTV AAAAVLAATH GALTREALES KMSGLSPSFL
301: LDKEDVFACY SAMLSQPTSP ASKSTTTTTG KRSSSSSCSE STDAASSYDA TAASFPAAAS CGSKRMRLEL PGGILR
101: GGESAAAAAP MDWFALARRA TVKWILETRG CFGFCHRTAY LAIAYFDRFC LRRCIDRSVM PWAARLLAVA CVSLAAKMEE YRAPALSEFR AGVGDDGYEF
201: SCVCIRRMEL LVLSTLDWRM AAVTPFDYLP CLSSRLRRHV GGGGGAGASA ALIFSAAEAA SVLDHRPSTV AAAAVLAATH GALTREALES KMSGLSPSFL
301: LDKEDVFACY SAMLSQPTSP ASKSTTTTTG KRSSSSSCSE STDAASSYDA TAASFPAAAS CGSKRMRLEL PGGILR
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.