CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89265
EES14166
KXG21076
KXG26019
KXG40039
OQU83580
OQU91278

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20740.1	KXG40039	AT1G02580.1	10962025
AT3G20740.1	KXG40039	AT1G02580.1	11114524
AT3G20740.1	KXG40039	AT1G02580.1	11148284
AT3G20740.1	KXG40039	AT1G02580.1	12970192
AT3G20740.1	KXG40039	AT1G02580.1	15456723
AT3G20740.1	KXG40039	AT1G02580.1	15469499
AT3G20740.1	KXG40039	AT1G02580.1	18812497
AT3G20740.1	EER89265	AT2G23380.1	14871310
AT3G20740.1	EER89265	AT2G23380.1	15456723
AT3G20740.1	EER89265	AT2G23380.1	18812497
AT3G20740.1	EES14166	AT3G12280.1	15221456
AT3G20740.1	KXG21076	AT3G12280.1	15221456
AT3G20740.1	KXG26019	AT3G12280.1	15221456
AT3G20740.1	OQU83580	AT3G12280.1	15221456
AT3G20740.1	EES14166	AT3G12280.1	18812497
AT3G20740.1	KXG21076	AT3G12280.1	18812497
AT3G20740.1	KXG26019	AT3G12280.1	18812497
AT3G20740.1	OQU83580	AT3G12280.1	18812497
AT3G20740.1	KXG40039	AT4G02020.1	15456723
AT3G20740.1	OQU91278	AT5G58230.1	12970192
AT3G20740.1	OQU91278	AT5G58230.1	18812497

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049608_P001	Maize	mitochondrion	74.83	72.89
Os08t0137100-01	Rice	cytosol	56.79	67.82
TraesCS4A01G388400.1	Wheat	cytosol, plastid	55.9	66.4
TraesCS7A01G089100.1	Wheat	cytosol	55.01	65.17
GSMUA_Achr5P26370_001	Banana	cytosol	53.01	64.67
VIT_19s0014g05210.t01	Wine grape	plastid	52.56	63.78
KRH71526	Soybean	cytosol	52.12	61.42
KRH31935	Soybean	cytosol	52.12	61.26
Solyc07g064090.2.1	Tomato	nucleus	49.67	59.95
PGSC0003DMT400049479	Potato	cytosol	49.44	59.68
OQU79846	Sorghum	plastid	63.03	57.52
CDY53612	Canola	plastid	47.22	57.45
CDY27567	Canola	plastid	46.77	56.91
KRH22237	Soybean	cytosol	48.78	56.88
TraesCS7D01G084500.1	Wheat	plastid	57.46	56.7
AT3G20740.1	Thale cress	cytosol	46.55	56.64
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	56.79	56.04
KRH27099	Soybean	cytosol, mitochondrion, nucleus	27.62	55.11
Os08t0137250-01	Rice	cytosol	57.02	54.94
TraesCS7A01G308300.1	Wheat	nucleus, plastid	56.12	53.28
CDY06378	Canola	mitochondrion	31.63	52.79
HORVU7Hr1G073410.1	Barley	cytosol	55.9	52.73
TraesCS7D01G305100.1	Wheat	nucleus, plastid	55.68	51.55
CDY19611	Canola	plastid	43.43	51.32
CDY19607	Canola	cytosol, nucleus, plastid	44.99	51.27
CDY68274	Canola	cytosol, nucleus	23.16	50.98
CDY56255	Canola	cytosol	43.21	49.36
CDY19610	Canola	cytoskeleton, cytosol, nucleus	30.07	45.3
Bra041121.1-P	Field mustard	cytosol	5.35	33.8
CDY10986	Canola	extracellular	9.35	20.39

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	EntrezGene:8067800	UniProt:C5YN03	EnsemblPlants:EES13318	ProteinID:EES13318
ProteinID:EES13318.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0019538	GO:GO:0035098
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10253	PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320
EnsemblPlantsGene:SORBI_3007G032500	SUPFAM:SSF50978	UniParc:UPI0001A87361	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002443823.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:2880004..2885277

Molecular Weight (calculated)

49658.1 Da

IEP (calculated)

7.090

GRAVY (calculated)

-0.235

Length

449 amino acids

Sequence
(BLAST)

001: MAPSKARQKR SLPQITTIAG TGPIANSQPA SSTLTKEVDQ QEEQCLKEPK IPPLPPITVN VVPQQGLGCE VVEGLLVPSR KREYKSNGKY TVGNHPIYAI
101: GFNFMDVRYY DVFATASSNS VTVYRCLENG SFGLLQAYVD EDKDESFYTL SWTINKVDRK PLLVAAGNNQ IIRIINCAGE KLAKSLVGHG GSIHEIRTHA
201: SKHSLIISAS KDESVRLWNV HTGVCILIFA GVGGHRHDVL SVDFHPTDVG LFASCGMDNT VKIWSMKEFW VYVEKSYSWT DNPSKFPTRH IQFPVLSAAV
301: HSEFVDCTRW LGDLILSKSV ENEILLWEPK PDKNKPGEGS VDILQKYPVP QCTLWCMKFS CDFHFNQLAV GNSKGEIYVW EVQSCPPVLI DRLSNKECKS
401: PIRQTAVSVD GSTILGAGDD GTIWRWDEVS PSTSKTKPIQ AAVATDANA

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.