Factsheet for VIT_16s0039g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38763	Soybean	cytosol	59.25	77.08
KRH09264	Soybean	nucleus	58.81	76.5
PGSC0003DMT400010951	Potato	cytosol	37.44	73.91
AT2G44150.1	Thale cress	nucleus	54.63	68.32
CDX79778	Canola	cytosol	51.98	64.66
Bra004809.1-P	Field mustard	nucleus	52.64	64.59
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	52.86	63.66
GSMUA_Achr2P12180_001	Banana	nucleus	51.98	63.27
Solyc12g100290.1.1	Tomato	nucleus	58.81	61.52
CDY41194	Canola	nucleus	45.81	59.94
Bra007496.1-P	Field mustard	nucleus	45.15	59.59
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	59.03	59.42
AT3G59960.1	Thale cress	nucleus	42.95	59.27
Bra000343.1-P	Field mustard	cytosol	46.7	58.56
CDX83438	Canola	cytosol	47.36	58.27
CDX95590	Canola	nucleus	46.7	58.08
CDX71856	Canola	nucleus	45.59	57.5
CDX98400	Canola	nucleus	40.09	56.7
CDX67818	Canola	nucleus	39.65	56.07
Bra003396.1-P	Field mustard	cytosol	31.5	55.21
Os09t0307800-01	Rice	cytosol	39.21	52.35
TraesCS7A01G453700.1	Wheat	nucleus	38.77	52.07
TraesCS7D01G443000.1	Wheat	nucleus	38.55	51.78
TraesCS7B01G354300.1	Wheat	nucleus	38.77	51.76
TraesCS5D01G184500.1	Wheat	nucleus	39.87	50.99
TraesCS5B01G177800.2	Wheat	nucleus	39.43	49.45
TraesCS5A01G179900.1	Wheat	nucleus	39.21	49.17
HORVU5Hr1G054880.2	Barley	mitochondrion	39.21	46.48
Zm00001d005563_P006	Maize	nucleus	34.58	46.31
Zm00001d020038_P001	Maize	nucleus	34.58	44.1
HORVU7Hr1G103420.7	Barley	nucleus	39.43	43.34
OQU89246	Sorghum	nucleus	34.8	42.36
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	3.74	31.48
VIT_11s0037g00880.t01	Wine grape	nucleus	30.62	28.14
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	20.93	25.33
VIT_18s0072g00220.t01	Wine grape	nucleus	19.82	24.32
VIT_18s0072g00200.t01	Wine grape	nucleus	21.37	18.84
VIT_18s0001g01700.t01	Wine grape	nucleus	25.77	11.23
VIT_05s0049g02100.t01	Wine grape	cytosol	1.76	8.89
VIT_07s0031g00320.t01	Wine grape	nucleus	13.88	7.22
VIT_07s0005g01490.t01	Wine grape	nucleus	13.44	7.05
VIT_15s0046g00760.t01	Wine grape	nucleus	15.2	6.62
VIT_05s0124g00250.t01	Wine grape	nucleus	15.2	6.37
VIT_16s0098g00350.t01	Wine grape	nucleus	14.1	5.93
VIT_04s0008g06180.t01	Wine grape	nucleus	13.88	5.56
VIT_00s0429g00030.t01	Wine grape	nucleus	8.15	3.34

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100252753	wikigene:100252753	MapMan:12.3.3.4	Gene3D:2.170.270.10	InterPro:AWS_dom
ProteinID:CCB50535	ProteinID:CCB50535.1	UniProt:F6HE89	EMBL:FN595750	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_SET2_plant
InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR025787	EntrezGene:LOC100252753	wikigene:LOC100252753
PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884
InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199
TIGR:TC51793	TMHMM:TMhelix	UniParc:UPI0002108780	ArrayExpress:VIT_16s0039g00740	EnsemblPlantsGene:VIT_16s0039g00740	EnsemblPlants:VIT_16s0039g00740.t01
RefSeq:XP_002268035	RefSeq:XP_002268035.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:+:370309..400930

Molecular Weight (calculated)

50900.0 Da

IEP (calculated)

9.243

GRAVY (calculated)

-0.271

Length

454 amino acids

Sequence
(BLAST)

001: MHISLIWLIS KRKRRKSVTS IYKLKHLFLS ALSLSLVSLV CFALCTLLHL SDLPNPKSAP LLSPRFKIIL LSIFCGAKLI EAMPSAKKLK QNIEQKGVGG
101: AFSKLLKELG NPVDFELPSS FNKWKPTSYT FIRRNIYLTK KIKRRLEDDG IFCSCSSGSG SSGVCGRDCL CGMLQSSCSS GCKCGTSCLN KPFQSRPVKK
201: MKMVETEKCG SGIVADEDIK QGEFVIEYVG EVIDDKTCED RLWKMKHLGE TNFYLCEINR DMVIDATYKG NKSRYINHSC DPNTEMQKWR IDGETRIGIF
301: ATRDIKRGEH LTYDYQFVQF GADQDCHCGA VGCRRKLGVK PSKPKLASSD AALKLVACQV AMSSSKMKAI LSGNNVYQNG GLHIGSSRLT HDQQRIGSRN
401: CIGEIIMVTR SMGERSFGII KRFDNNSKKH LIMFEDGDGE FLDMSKEDWE FVTL

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.