CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76906
CDX89487
CDY13746
CDY25607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10140.1	CDX76906	AT2G22540.1	19011118
AT5G10140.1	CDX89487	AT2G22540.1	19011118
AT5G10140.1	CDY13746	AT2G22540.1	19011118
AT5G10140.1	CDY25607	AT2G22540.1	19011118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84867	Canola	nucleus	76.3	82.14
Bra022771.1-P	Field mustard	nucleus	52.61	77.62
CDX85776	Canola	nucleus	65.88	70.92
CDX81163	Canola	nucleus	63.98	68.53
CDY40081	Canola	nucleus	63.51	68.37
AT5G10140.1	Thale cress	nucleus	63.03	67.86
CDX69859	Canola	nucleus	63.03	67.51
CDX78370	Canola	nucleus	63.03	67.51
CDY21642	Canola	nucleus	62.56	67.01
CDY14535	Canola	cytosol, nucleus, plastid	24.64	62.65
CDY21638	Canola	nucleus	63.51	58.52
CDY33995	Canola	nucleus	48.34	53.12
CDY31290	Canola	nucleus	47.87	52.6
CDY33990	Canola	nucleus	47.39	52.08
CDY31286	Canola	nucleus	46.92	49.75
CDY31289	Canola	nucleus	46.45	49.25
CDY08824	Canola	nucleus	46.45	48.76
CDY33987	Canola	nucleus, plastid	17.54	33.64
KRH42691	Soybean	nucleus	29.38	33.33
KRH58791	Soybean	nucleus	31.28	33.0
Solyc12g087830.1.1	Tomato	nucleus	30.81	32.83
CDY08825	Canola	nucleus	46.92	28.86
PGSC0003DMT400045804	Potato	nucleus	27.01	25.33
Solyc05g015720.1.1	Tomato	nucleus	15.64	25.19
Solyc12g087810.1.1	Tomato	nucleus	14.69	22.14

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078GHF3	UniProt:A0A078GHF3	EnsemblPlants:CDY24038	ProteinID:CDY24038
ProteinID:CDY24038.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00024568001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF340
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EEBD9D
SEG:seg	:	:	:	:	:

Description

BnaC03g16530DBnaC03g16530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHF3]

Coordinates

chrLK032152:-:602612..609362

Molecular Weight (calculated)

23742.3 Da

IEP (calculated)

5.079

GRAVY (calculated)

-0.533

Length

211 amino acids

Sequence
(BLAST)

001: MGRKKLEIKR IEENSSRQVT FCKQRNGLIE KARQLSVLCD ASVGLLVVSA SDKLYSFSSG DRRKENDGTP DMVGYEEQIL IKDWRRTLID MEKKHADDLN
101: ALDLLSKSLN YSSHHELLEL VESKLVESIV DVSVDSLVEL EDHLETALSV TRARKAELML KLVESLKEKE ENQILASQIE KKKLEGGEAD NIEMSSGQNL
201: QHQTSCNSPA A

Best Arabidopsis Sequence Match ( AT5G10140.1 )
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN

Arabidopsis Description

FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.