Factsheet for Bra022771.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra030228.1-P
Bra038511.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10140.1	Bra030228.1-P	AT2G22540.1	19011118
AT5G10140.1	Bra038511.1-P	AT2G22540.1	19011118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84867	Canola	nucleus	100.0	72.96
Bra006051.1-P	Field mustard	nucleus	83.22	60.41
Bra028599.1-P	Field mustard	nucleus	81.82	59.69
AT5G10140.1	Thale cress	nucleus	81.82	59.69
Bra009055.1-P	Field mustard	nucleus	81.82	56.8
CDY24038	Canola	nucleus	77.62	52.61
Bra024350.1-P	Field mustard	nucleus	58.74	42.86
Bra031884.1-P	Field mustard	nucleus	58.74	42.21
Bra024351.1-P	Field mustard	nucleus	58.74	42.0
Bra031888.1-P	Field mustard	nucleus	50.35	40.45
Bra031886.1-P	Field mustard	nucleus	53.15	30.4
KRH58791	Soybean	nucleus	39.86	28.5
KRH42691	Soybean	nucleus	36.36	27.96
Solyc12g087830.1.1	Tomato	nucleus	37.06	26.77
PGSC0003DMT400045804	Potato	nucleus	28.67	18.22
Solyc12g087810.1.1	Tomato	nucleus	13.29	13.57
Solyc05g015720.1.1	Tomato	nucleus	11.19	12.21

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra022771	EnsemblPlants:Bra022771.1	EnsemblPlants:Bra022771.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4E1X1	InterPro:MADS_MEF2-like	PFAM:PF00319
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025401D1	SEG:seg	:

Description

AT5G10140 (E=5e-033) FLC, FLF, AGL25 | FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor

Coordinates

chrA03:+:6961946..6966797

Molecular Weight (calculated)

16042.5 Da

IEP (calculated)

8.709

GRAVY (calculated)

-0.415

Length

143 amino acids

Sequence
(BLAST)

001: MGRKKLEIKR IEKNSSRQVT FCKRRNGLIE KARQLSVLCE ASVGLLVVSA SDKLYSFSSG DRLEKILDRY GKKHADDLNA LAELMLKLVE SLKEKENLLK
101: EENQVLASQI EKKNLEGAEA DNIEMSSGQI SDINLPVTLP LLN

Best Arabidopsis Sequence Match ( AT5G10140.1 )
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN

Arabidopsis Description

FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.