Factsheet for Bra006051.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra030228.1-P
Bra038511.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10140.1	Bra030228.1-P	AT2G22540.1	19011118
AT5G10140.1	Bra038511.1-P	AT2G22540.1	19011118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78370	Canola	nucleus	99.49	99.49
Bra028599.1-P	Field mustard	nucleus	87.31	87.76
AT5G10140.1	Thale cress	nucleus	83.76	84.18
Bra022771.1-P	Field mustard	nucleus	60.41	83.22
Bra009055.1-P	Field mustard	nucleus	83.76	80.1
Bra031888.1-P	Field mustard	nucleus	54.31	60.11
Bra024350.1-P	Field mustard	nucleus	57.36	57.65
Bra024351.1-P	Field mustard	nucleus	56.85	56.0
Bra031884.1-P	Field mustard	nucleus	55.33	54.77
Bra031886.1-P	Field mustard	nucleus	49.24	38.8
KRH42691	Soybean	nucleus	36.04	38.17
KRH58791	Soybean	nucleus	38.58	38.0
Solyc12g087830.1.1	Tomato	nucleus	37.06	36.87
Solyc05g015720.1.1	Tomato	nucleus	19.29	29.01
Solyc12g087810.1.1	Tomato	nucleus	19.29	27.14
PGSC0003DMT400045804	Potato	nucleus	29.95	26.22

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AB682787	EMBL:AB682788	EMBL:AB682789	EMBL:AB682790
ProteinID:ABI30001	ProteinID:ABI30001.1	ProteinID:BAM66582	ProteinID:BAM66582.1	ProteinID:BAM66583	ProteinID:BAM66583.1
ProteinID:BAM66584	ProteinID:BAM66584.1	ProteinID:BAM66585	ProteinID:BAM66585.1	EnsemblPlantsGene:Bra006051	EnsemblPlants:Bra006051.1
EnsemblPlants:Bra006051.1-P	ncoils:Coil	EMBL:DQ866876	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	UniProt:Q0GFF2
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000009FF9E
SEG:seg	:	:	:	:	:

Description

AT5G10140 (E=1e-061) FLC, FLF, AGL25 | FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor

Coordinates

chrA03:-:1764912..1767856

Molecular Weight (calculated)

21646.3 Da

IEP (calculated)

9.656

GRAVY (calculated)

-0.308

Length

197 amino acids

Sequence
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRSGLIE KARQLSVLCD ASVALLVVSS SGKLYSFSAG DNLVRILDRY GKQHADDLKA LNLQSKALSY GSHNELLELV
101: DSKLVESNVG GVSVDTLVQL EGVLENALSL TRARKTELML KLVDSLKEKE KLLKEENQAL AGQKEKKNLA GAEADNMEMS PGQISDINLP VTLPLLN

Best Arabidopsis Sequence Match ( AT5G10140.1 )
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN

Arabidopsis Description

FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.