CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33990	Canola	nucleus	98.44	98.44
CDY31290	Canola	nucleus	93.23	93.23
CDY14535	Canola	cytosol, nucleus, plastid	34.9	80.72
CDY31286	Canola	nucleus	67.71	65.33
CDX85776	Canola	nucleus	65.62	64.29
CDX69859	Canola	nucleus	65.62	63.96
CDY31289	Canola	nucleus	66.15	63.82
CDY21642	Canola	nucleus	65.1	63.45
CDY40081	Canola	nucleus	64.06	62.76
CDY08824	Canola	nucleus	65.62	62.69
CDX78370	Canola	nucleus	64.06	62.44
CDX81163	Canola	nucleus	63.54	61.93
CDX84867	Canola	nucleus	63.02	61.73
CDY21638	Canola	nucleus	64.58	54.15
CDY33987	Canola	nucleus, plastid	30.21	52.73
CDY24038	Canola	nucleus	53.12	48.34
CDY08825	Canola	nucleus	69.79	39.07
Solyc12g087830.1.1	Tomato	nucleus	39.06	37.88
Solyc05g015720.1.1	Tomato	nucleus	23.96	35.11
KRH42691	Soybean	nucleus	33.33	34.41
KRH58791	Soybean	nucleus	34.9	33.5
Solyc12g087810.1.1	Tomato	nucleus	21.35	29.29
PGSC0003DMT400045804	Potato	nucleus	31.77	27.11

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078H610	UniProt:A0A078H610	EnsemblPlants:CDY33995	ProteinID:CDY33995
ProteinID:CDY33995.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00055849001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0004EDE505	SEG:seg	:	:	:

Description

BnaC02g43420DBnaC02g43420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H610]

Coordinates

chrLK032325:-:410685..414965

Molecular Weight (calculated)

21331.5 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.478

Length

192 amino acids

Sequence
(BLAST)

001: MGRRKVEIKL IENKSSRQVT FSKRRTGLIE KARQLSVLCE SSVAVLVVSA SGKLYNSSSG DNMTNIIDRY GIQHACELRS LNLAEKTRSY LPHNELLESV
101: KSNLEESNVD NVSVDSLISL EDQLETALSA TRARKTELTM EFVKMLQEKE ELLREENLVL ASQIGKTNGG RQNNSPANSS GINPPETLPL LK

Best Arabidopsis Sequence Match ( AT5G65060.1 )
(BLAST)

001: MGRRKVEIKR IENKSSRQVT FSKRRKGLIE KARQLSILCE SSIAVVAVSG SGKLYDSASG DNMSKIIDRY EIHHADELKA LDLAEKIRNY LPHKELLEIV
101: QSKLEESNVD NVSVDSLISM EEQLETALSV IRAKKTELMM EDMKSLQERE KLLIEENQIL ASQVGKKTFL VIEGDRGMSR ENGSGNKVPE TLSLLK

Arabidopsis Description

MAF3Agamous-like MADS-box protein AGL70 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.