CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67529
CDX69650
CDX74635
CDX93553
CDX95050
CDX97497
CDX99702
CDY04455
CDY09784
CDY13364
CDY27283
CDY27661
CDY31137
CDY44550
CDY45889
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42080.1	CDX93553	AT1G08560.1	19959995
AT5G42080.1	CDX95050	AT1G08560.1	19959995
AT5G42080.1	CDX97497	AT1G08560.1	19959995
AT5G42080.1	CDY31137	AT1G08560.1	19959995
AT5G42080.1	CDY04455	AT1G59610.1	20231465
AT5G42080.1	CDY27283	AT1G59610.1	20231465
AT5G42080.1	CDY44550	AT1G59610.1	20231465
AT5G42080.1	CDY45889	AT1G59610.1	20231465
AT5G42080.1	CDX69650	AT5G13300.1	15923323
AT5G42080.1	CDY09784	AT5G13300.1	15923323
AT5G42080.1	CDX74635	AT5G35750.1	18642946
AT5G42080.1	CDY47297	AT5G35750.1	18642946
AT5G42080.1	CDX67529	AT5G42080.1	19144001
AT5G42080.1	CDX99702	AT5G42080.1	19144001
AT5G42080.1	CDY13364	AT5G42080.1	19144001
AT5G42080.1	CDY27661	AT5G42080.1	19144001
AT5G42080.1	CDX67529	AT5G42080.1	20231465
AT5G42080.1	CDX99702	AT5G42080.1	20231465
AT5G42080.1	CDY13364	AT5G42080.1	20231465
AT5G42080.1	CDY27661	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67529	Canola	cytosol	99.18	99.18
Bra025448.1-P	Field mustard	cytosol	94.75	99.14
CDY13364	Canola	cytosol	99.02	99.02
CDX99702	Canola	cytosol	99.02	99.02
AT5G42080.1	Thale cress	cytosol	97.7	97.7
KRH77654	Soybean	endoplasmic reticulum	86.89	86.89
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	86.89	86.89
KRH60047	Soybean	endoplasmic reticulum	86.23	86.23
KRH41321	Soybean	endoplasmic reticulum, nucleus	85.9	85.9
GSMUA_Achr1P04880_001	Banana	cytosol	84.75	84.75
Os05t0556100-01	Rice	plasma membrane	84.26	84.4
EES19921	Sorghum	cytosol	84.1	84.24
TraesCS1B01G411700.3	Wheat	cytosol	82.79	82.92
TraesCS1D01G393000.2	Wheat	cytosol	82.46	82.59
TraesCS1A01G385400.2	Wheat	cytosol, golgi, nucleus, unclear	82.46	82.59
CDY25074	Canola	cytosol	82.13	82.13
CDX67862	Canola	cytosol	82.13	82.13
EES01270	Sorghum	cytosol	81.15	81.28
Os01t0681100-01	Rice	cytosol, plasma membrane	24.1	79.89
Zm00001d009504_P002	Maize	cytosol	84.26	78.35
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	84.1	76.57
HORVU1Hr1G084970.2	Barley	plasma membrane	82.79	74.7
CDY33737	Canola	cytosol	66.72	66.29
CDX81675	Canola	cytosol	66.72	66.29
CDY52026	Canola	cytosol	66.39	65.96
CDX84001	Canola	cytosol	66.39	65.96
CDY41188	Canola	cytosol	67.54	65.92
CDX71832	Canola	cytosol	67.54	65.92
CDY42672	Canola	cytosol	66.39	64.8
CDX89053	Canola	cytosol	66.39	64.7
CDY23444	Canola	cytosol	63.93	63.11
CDY30477	Canola	cytosol	63.77	62.95
CDY35022	Canola	cytosol	29.02	61.67
CDY35023	Canola	cytosol	32.79	57.64
TraesCS6B01G443600.1	Wheat	cytosol	41.31	48.18
TraesCS6D01G385300.1	Wheat	cytosol	37.05	45.66
CDX94910	Canola	cytosol	21.64	27.79
CDY47217	Canola	cytosol	22.3	26.46
CDY53048	Canola	cytosol	21.48	26.2
CDY28314	Canola	cytosol	34.43	26.05
CDX68994	Canola	cytosol	34.59	25.95
CDY46101	Canola	cytosol	34.1	25.9
CDY47216	Canola	cytosol	22.79	25.84
CDY48440	Canola	cytosol	34.1	25.77
CDX72418	Canola	cytosol	34.26	25.15
CDX75370	Canola	cytosol	34.59	25.12
CDY31035	Canola	cytosol	24.59	23.96
CDY36456	Canola	cytosol	7.21	23.66
CDY20643	Canola	cytosol	24.43	23.54
CDY34120	Canola	cytosol	25.08	23.39
CDY53046	Canola	cytosol	25.74	23.29
CDY02039	Canola	cytosol, plastid	21.31	23.26
CDY24536	Canola	cytosol	24.75	23.09
CDY23281	Canola	cytosol	14.59	22.47
CDY29721	Canola	cytosol	5.41	21.29
CDY34117	Canola	cytosol	17.87	20.64
CDY03289	Canola	cytosol	17.87	20.64
CDX93442	Canola	cytosol	28.52	19.1
CDY34897	Canola	cytosol	28.52	19.02
CDY45889	Canola	cytosol	28.52	18.91
CDY04455	Canola	cytosol	28.2	18.74
CDY27283	Canola	cytosol	23.28	18.61
CDY44550	Canola	cytosol	28.52	18.05
CDX94909	Canola	mitochondrion	19.67	16.51
CDY53047	Canola	cytosol	2.46	15.46
CDY33414	Canola	cytosol	19.51	15.32
CDY25877	Canola	plastid	20.66	15.31
CDY42203	Canola	cytosol	19.51	15.14
CDY50514	Canola	plastid	16.56	13.19
CDY24530	Canola	cytosol, nucleus, plasma membrane	11.31	10.88
CDY29720	Canola	cytosol, extracellular	5.57	7.94

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	GO:A0A078GQL6	UniProt:A0A078GQL6	EnsemblPlants:CDY27661
ProteinID:CDY27661	ProteinID:CDY27661.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central
InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00038427001	InterPro:G_DYNAMIN_dom	InterPro:IPR020850
InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195
ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF58	SMART:SM00053
SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI0004EF4257	SEG:seg	:	:

Description

BnaUnng00110DBnaUnng00110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQL6]

Coordinates

chrLK032208:+:59030..63195

Molecular Weight (calculated)

68177.2 Da

IEP (calculated)

8.332

GRAVY (calculated)

-0.280

Length

610 amino acids

Sequence
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGAREYAEFL HLPRKRFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VEGQSENIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGERTFGVL TKIDLMDKGT DAVEILEGKS FKLKYPWVGV VNRSQADINK NVDMIAARRR EREYFSNTTE YRHLAHKMGS EHLAKMLSKH LEHVIKSRIP
301: GIQSLINKTV LELESELSRL GKPIAADAGG KLYSIMEICR LFDQIFKDHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDAE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AVMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Arabidopsis Description

DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.