CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01512
KRH08461
KRH14106
KRH27552
KRH27831
KRH36411
KRH41321
KRH45201
KRH60047
KRH70119
KRH74010
KRH77654

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42080.1	KRH08461	AT1G08560.1	19959995
AT5G42080.1	KRH70119	AT1G08560.1	19959995
AT5G42080.1	KRH27552	AT1G59610.1	20231465
AT5G42080.1	KRH36411	AT1G59610.1	20231465
AT5G42080.1	KRH01512	AT5G13300.1	15923323
AT5G42080.1	KRH45201	AT5G13300.1	15923323
AT5G42080.1	KRH14106	AT5G35750.1	18642946
AT5G42080.1	KRH74010	AT5G35750.1	18642946
AT5G42080.1	KRH27831	AT5G42080.1	19144001
AT5G42080.1	KRH41321	AT5G42080.1	19144001
AT5G42080.1	KRH60047	AT5G42080.1	19144001
AT5G42080.1	KRH77654	AT5G42080.1	19144001
AT5G42080.1	KRH27831	AT5G42080.1	20231465
AT5G42080.1	KRH41321	AT5G42080.1	20231465
AT5G42080.1	KRH60047	AT5G42080.1	20231465
AT5G42080.1	KRH77654	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	98.03	98.03
KRH60047	Soybean	endoplasmic reticulum	93.44	93.44
KRH41321	Soybean	endoplasmic reticulum, nucleus	92.95	92.95
CDX67529	Canola	cytosol	87.38	87.38
Bra028525.1-P	Field mustard	cytosol	87.21	87.21
CDY13364	Canola	cytosol	87.21	87.21
AT5G42080.1	Thale cress	cytosol	87.05	87.05
Bra025448.1-P	Field mustard	cytosol	83.11	86.96
CDY27661	Canola	cytosol	86.89	86.89
CDX99702	Canola	cytosol	86.72	86.72
GSMUA_Achr1P04880_001	Banana	cytosol	85.57	85.57
Os05t0556100-01	Rice	plasma membrane	85.41	85.55
EES19921	Sorghum	cytosol	84.43	84.56
TraesCS1D01G393000.2	Wheat	cytosol	83.93	84.07
TraesCS1B01G411700.3	Wheat	cytosol	83.93	84.07
TraesCS1A01G385400.2	Wheat	cytosol, golgi, nucleus, unclear	83.93	84.07
Os01t0681100-01	Rice	cytosol, plasma membrane	24.92	82.61
EES01270	Sorghum	cytosol	81.97	82.1
KRH47905	Soybean	cytosol, endoplasmic reticulum	81.97	82.1
Zm00001d009504_P002	Maize	cytosol	83.93	78.05
KRH06461	Soybean	cytosol	65.25	76.69
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	83.93	76.42
HORVU1Hr1G084970.2	Barley	plasma membrane	83.93	75.74
KRH41722	Soybean	endoplasmic reticulum, nucleus	68.2	67.42
KRH60421	Soybean	endoplasmic reticulum	68.2	67.42
KRH04285	Soybean	cytosol	67.54	67.32
KRH48908	Soybean	cytosol, nucleus	68.2	67.31
KRH49665	Soybean	endoplasmic reticulum	67.7	66.83
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	67.38	66.72
KRH66384	Soybean	cytosol, endoplasmic reticulum	67.21	66.34
KRH70357	Soybean	endoplasmic reticulum, nucleus	66.89	66.02
TraesCS6B01G443600.1	Wheat	cytosol	41.31	48.18
TraesCS6D01G385300.1	Wheat	cytosol	36.72	45.25
KRH10618	Soybean	plastid	36.23	26.85
KRH21736	Soybean	nucleus	36.23	26.76
KRH49844	Soybean	plastid	35.41	26.6
KRH42074	Soybean	endoplasmic reticulum, nucleus	35.41	26.54
KRH62781	Soybean	nucleus	35.08	26.19
KRH21193	Soybean	cytosol	20.49	25.2
KRH42928	Soybean	cytosol	23.28	23.71
KRH21190	Soybean	cytosol	25.08	23.01
KRH59040	Soybean	cytosol	25.41	22.96
KRH11082	Soybean	cytosol	5.41	22.6
KRH36411	Soybean	endoplasmic reticulum, nucleus	28.2	18.66
KRH27552	Soybean	cytosol	28.2	18.66
KRH55251	Soybean	plastid	23.11	17.74
KRH51295	Soybean	endoplasmic reticulum	26.39	17.61
KRH01870	Soybean	endoplasmic reticulum	26.39	17.61
KRH26094	Soybean	plastid	23.11	17.54
KRH42202	Soybean	nucleus	19.51	15.85
KRH58326	Soybean	plasma membrane	8.52	10.42

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100819043	MapMan:22.1.7.1	Gene3D:3.40.50.300	EMBL:ACUP02000681	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	EnsemblPlantsGene:GLYMA_01G225900
GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom
UniProt:I1JAE5	InterPro:IPR020850	InterPro:IPR030381	EnsemblPlants:KRH77654	ProteinID:KRH77654	ProteinID:KRH77654.1
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF58	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	UniParc:UPI00023376FD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:55458039..55463958

Molecular Weight (calculated)

68316.3 Da

IEP (calculated)

7.697

GRAVY (calculated)

-0.314

Length

610 amino acids

Sequence
(BLAST)

001: MENLISLVNK IQRACTALGD HGEASALPTL WDSLPAIAVV GGQSSGKSSV LESVVGKDFL PRGSGIVTRR PLVLQLHKID EGGREYAEFL HLPRKRFTDF
101: AAVRKEIQDE TDRETGRTRQ ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VEGQPDSIVQ DIENMVRSYI EKPNCIILAI TPANQDLATS DAIKISREVD
201: PTGERTFGVL TKIDLMDKGT DAVEMLEGRA YRLKYPWIGV VNRSQADINK NVDMIAARRR EHEYFSNTPE YKHLAHRMGS EHLAKMLSKH LEAVIKSKIP
301: GIQSLISKTI AELEAELSRL GKPVAADDGG KLYAVMEICR SFDHIFKEHL DGVRPGGDKI YNVFDNQLPA ALKRLQFDKQ LSMENIRKLI TEADGYQPHL
401: IAPEQGYRRL IESSLTTVRG PAEAAVDVVH SLLKDLVHKA ISETLDLKQY PGLRVEVGNA AIDSLEKMRE ESKRATLQLV DMECGYLTVD YFRKLPQDVD
501: KGGNPTHSIF DRYNDSYLRR IGTNVLSYVN MVCASLRHSI PKSIVYCQVR EAKRGLLDHF FTELGKIEPK RLSSLLNEDP AIMERRSALS KRLELYRSAQ
601: AEIDAVAWSK

Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Arabidopsis Description

DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.