CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH27552	plasma membrane
KRH27831
KRH36411	plasma membrane
KRH41321
KRH41722
KRH49665
KRH60047
KRH60421
KRH70357
KRH77654

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	KRH27552	AT1G10290.1	25462567
AT1G10290.1	KRH36411	AT1G10290.1	25462567
AT1G10290.1	KRH27552	AT1G59610.1	25462567
AT1G10290.1	KRH36411	AT1G59610.1	25462567
AT1G10290.1	KRH27552	AT1G59610.1	25462567
AT1G10290.1	KRH36411	AT1G59610.1	25462567
AT1G59610.1	KRH41722	AT1G14830.1	21798944
AT1G59610.1	KRH49665	AT1G14830.1	21798944
AT1G59610.1	KRH60421	AT1G14830.1	21798944
AT1G59610.1	KRH70357	AT1G14830.1	21798944
AT1G59610.1	KRH27552	AT1G59610.1	25462567
AT1G59610.1	KRH36411	AT1G59610.1	25462567
AT1G59610.1	KRH27831	AT5G42080.1	20231465
AT1G59610.1	KRH41321	AT5G42080.1	20231465
AT1G59610.1	KRH60047	AT5G42080.1	20231465
AT1G59610.1	KRH77654	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36411	Soybean	endoplasmic reticulum, nucleus	97.4	97.4
VIT_18s0089g00350.t01	Wine grape	cytosol	86.55	85.71
GSMUA_Achr1P18350_001	Banana	cytosol	78.42	80.87
KRH51295	Soybean	endoplasmic reticulum	80.15	80.85
KRH01870	Soybean	endoplasmic reticulum	80.15	80.85
CDY31035	Canola	cytosol	54.34	80.03
VIT_15s0107g00170.t01	Wine grape	cytosol	20.39	80.0
CDX94910	Canola	cytosol	41.11	79.79
GSMUA_Achr7P05530_001	Banana	nucleus	79.39	79.48
AT1G10290.1	Thale cress	cytosol	78.63	79.32
CDY20643	Canola	cytosol	54.23	78.99
AT1G59610.1	Thale cress	cytosol	78.74	78.91
GSMUA_Achr4P20040_001	Banana	cytosol	78.63	78.89
CDY34897	Canola	cytosol	78.09	78.69
Bra031707.1-P	Field mustard	cytosol	78.09	78.69
CDY45889	Canola	cytosol	78.42	78.59
CDX93442	Canola	cytosol	77.44	78.38
CDY04455	Canola	cytosol	77.98	78.32
Bra018449.1-P	Field mustard	cytosol	76.79	77.55
GSMUA_Achr3P01090_001	Banana	nucleus	77.01	77.34
CDY27283	Canola	cytosol	63.56	76.8
CDX94909	Canola	mitochondrion	60.09	76.2
Bra017901.1-P	Field mustard	cytosol	78.09	76.19
Bra019950.1-P	Field mustard	cytosol	77.44	76.04
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	75.05	75.79
Zm00001d037279_P005	Maize	plasma membrane	74.84	75.58
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	74.3	75.03
TraesCS7D01G200900.1	Wheat	golgi, unclear	73.32	74.86
EES05560	Sorghum	nucleus	74.73	74.81
CDY44550	Canola	cytosol	77.98	74.59
TraesCS7B01G104500.1	Wheat	golgi, unclear	72.99	74.53
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	72.99	74.53
Zm00001d017979_P002	Maize	extracellular, mitochondrion	74.4	74.48
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	72.67	74.28
TraesCS6D01G291700.1	Wheat	nucleus	72.56	74.09
Os06t0247800-01	Rice	plasma membrane	72.99	73.87
Os02t0738900-01	Rice	plasma membrane	73.86	73.78
TraesCS6A01G312300.3	Wheat	nucleus	72.78	73.74
Bra035433.1-P	Field mustard	cytosol	77.87	71.73
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	20.61	71.7
Os08t0425100-01	Rice	plasma membrane	58.57	70.5
KXG25176	Sorghum	cytosol	56.51	69.28
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	72.89	69.21
TraesCS6B01G342500.2	Wheat	cytosol	69.2	69.12
Zm00001d032256_P001	Maize	cytosol	59.76	59.25
Zm00001d051815_P002	Maize	cytosol	31.89	53.55
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	20.28	30.36
KRH41722	Soybean	endoplasmic reticulum, nucleus	19.96	29.82
KRH60421	Soybean	endoplasmic reticulum	19.96	29.82
KRH48908	Soybean	cytosol, nucleus	19.85	29.61
KRH47905	Soybean	cytosol, endoplasmic reticulum	19.31	29.23
KRH66384	Soybean	cytosol, endoplasmic reticulum	19.52	29.13
KRH49665	Soybean	endoplasmic reticulum	19.41	28.96
KRH70357	Soybean	endoplasmic reticulum, nucleus	19.41	28.96
KRH41321	Soybean	endoplasmic reticulum, nucleus	19.09	28.85
KRH04285	Soybean	cytosol	18.98	28.59
KRH60047	Soybean	endoplasmic reticulum	18.87	28.52
KRH77654	Soybean	endoplasmic reticulum	18.66	28.2
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	18.44	27.87
KRH06461	Soybean	cytosol	14.97	26.59
KRH49844	Soybean	plastid	17.35	19.7
KRH42074	Soybean	endoplasmic reticulum, nucleus	17.14	19.41
KRH10618	Soybean	plastid	17.25	19.32
KRH21736	Soybean	nucleus	17.14	19.13
KRH62781	Soybean	nucleus	16.59	18.73
KRH42928	Soybean	cytosol	11.82	18.2
KRH59040	Soybean	cytosol	12.47	17.04
KRH21190	Soybean	cytosol	11.5	15.94
KRH11082	Soybean	cytosol	2.49	15.75
KRH21193	Soybean	cytosol	8.46	15.73
KRH42202	Soybean	nucleus	12.04	14.78
KRH55251	Soybean	plastid	11.71	13.58
KRH26094	Soybean	plastid	11.61	13.31
KRH58326	Soybean	plasma membrane	5.75	10.62
HORVU4Hr1G074040.2	Barley	nucleus	2.6	9.38
HORVU4Hr1G073960.12	Barley	cytosol	4.01	9.27
HORVU5Hr1G092990.14	Barley	cytosol	2.6	9.06

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100798346	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	EMBL:ACUP02007813
ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED
InterPro:GED_dom	EnsemblPlantsGene:GLYMA_12G242300	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:G_DYNAMIN_dom	UniProt:I1LVI3	InterPro:IPR001849	InterPro:IPR011993	InterPro:IPR020850
InterPro:IPR030381	ProteinID:KRH27551.1	EnsemblPlants:KRH27552	ProteinID:KRH27552	ProteinID:KRH27552.1	InterPro:P-loop_NTPase
PFAM:PF00169	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF57	SMART:SM00053	SMART:SM00233	SUPFAM:SSF50729	SUPFAM:SSF52540	UniParc:UPI000233CEBA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:40055601..40073755

Molecular Weight (calculated)

100155.0 Da

IEP (calculated)

9.623

GRAVY (calculated)

-0.506

Length

922 amino acids

Sequence
(BLAST)

001: MAAIDDLSEL ADSMRQAAAL LADEDVDESS NSRRPSTFLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPICIDL QRDTSLSSKS IILQIDNKSQ
101: LVSASALRHS LQDRLSKSSS GKGRDQIYLK LRTSTAPPLK LVDLPGLDQR IMDESLVSEY AEHNDAILLV IVPAAQAPEI ASSRALKYAK EYDGEGTRTI
201: GIISKIDQAA SDQKALAGVQ ALLLNQGPAK TSDIPWIALI GQSVSIATAQ SGSAGSENSL ETAWRAESES LKSILTGAPP SKLGRIALVD ALAHQIQNRM
301: KLRLPNLLSG LQGKSQIVQD ELARLGESMV TTSEGTRAIA LELCREFEDK FLQHITTGEG AGWKIVSCFE GRFPDRMKQL PLDRHFDINN VKRIVLEADG
401: YQPYLISPEK GLRSLIKGVL ELAKEPSRLC VDEVHRVLID IVSSAANATR GLGRYPPFKR EVVAIATAAL EGFKNESKKM VVALVDMERA FVPPQHFIRL
501: VQRRMERQRR EEELKGRSSK KGQDAEQSIL NRATSPQTGG SMKSMKEDKK EKEKDKSGLA EKEGQEGSGL KTAGPEGEIT AGFLLKKSAK TNGWSRRWFV
601: LNEKTGKLGY TKKQEERHFR GVITLEECNI EEVADEEDPP SKSSKDKKSN GPDSGKVNLV FKITSRVPYK TVLKAHSAVV LKAESAADKI EWIKKISQVI
701: QAKGGQIRIS SDGAPTMRHS LSDGSLDTMA RRPADPEEEL RWMSQEVRGY VEAVLNSLAA NVPKAVVLCQ VEKAKEDMLN QLYSSVSAQS TAKIEELLLE
801: DQNVKRRRDR IQKQSSLLSK LTRQLSIHDN RAAAASGWSN GSAESSPRSS SGPGDDWRSA FDAAANGPVS RSGSSRSGSN GHSRHSSDPA QNGDVNSGSN
901: SSSRRTPNRL PPAPPGSSGY KY

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.