CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67529
CDX81675
CDX84001
CDX99702
CDY04455
CDY07049
CDY07629
CDY13364
CDY20508
CDY27283
CDY27661
CDY33737
CDY44550
CDY45889
CDY52026
CDY60337
CDY61712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59610.1	CDX81675	AT1G14830.1	21798944
AT1G59610.1	CDX84001	AT1G14830.1	21798944
AT1G59610.1	CDY33737	AT1G14830.1	21798944
AT1G59610.1	CDY52026	AT1G14830.1	21798944
AT1G59610.1	CDY04455	AT1G59610.1	25462567
AT1G59610.1	CDY27283	AT1G59610.1	25462567
AT1G59610.1	CDY44550	AT1G59610.1	25462567
AT1G59610.1	CDY45889	AT1G59610.1	25462567
AT1G59610.1	CDY07049	AT2G40060.1	20231465
AT1G59610.1	CDY07629	AT2G40060.1	20231465
AT1G59610.1	CDY20508	AT2G40060.1	20231465
AT1G59610.1	CDY60337	AT2G40060.1	20231465
AT1G59610.1	CDY61712	AT2G40060.1	20231465
AT1G59610.1	CDX67529	AT5G42080.1	20231465
AT1G59610.1	CDX99702	AT5G42080.1	20231465
AT1G59610.1	CDY13364	AT5G42080.1	20231465
AT1G59610.1	CDY27661	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04455	Canola	cytosol	97.28	97.49
AT1G59610.1	Thale cress	cytosol	96.41	96.41
CDY44550	Canola	cytosol	99.24	94.71
CDY27283	Canola	cytosol	78.26	94.36
CDX94910	Canola	cytosol	47.17	91.37
CDX93442	Canola	cytosol	90.33	91.22
Bra035433.1-P	Field mustard	cytosol	99.13	91.11
CDX94909	Canola	mitochondrion	71.09	89.96
CDY31035	Canola	cytosol	61.2	89.94
CDY34897	Canola	cytosol	89.35	89.84
CDY20643	Canola	cytosol	60.98	88.63
VIT_18s0089g00350.t01	Wine grape	cytosol	80.87	79.91
KRH27552	Soybean	cytosol	78.59	78.42
KRH36411	Soybean	endoplasmic reticulum, nucleus	78.48	78.31
GSMUA_Achr7P05530_001	Banana	nucleus	76.09	76.0
GSMUA_Achr1P18350_001	Banana	cytosol	73.7	75.84
GSMUA_Achr4P20040_001	Banana	cytosol	75.43	75.52
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	74.02	74.59
GSMUA_Achr3P01090_001	Banana	nucleus	74.13	74.29
Zm00001d037279_P005	Maize	plasma membrane	73.7	74.26
EES05560	Sorghum	nucleus	73.8	73.72
Zm00001d017979_P002	Maize	extracellular, mitochondrion	73.8	73.72
VIT_15s0107g00170.t01	Wine grape	cytosol	18.8	73.62
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	72.93	73.49
TraesCS7D01G200900.1	Wheat	golgi, unclear	71.85	73.2
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	71.74	73.09
TraesCS7B01G104500.1	Wheat	golgi, unclear	71.63	72.98
Os06t0247800-01	Rice	plasma membrane	72.07	72.78
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	71.3	72.73
TraesCS6D01G291700.1	Wheat	nucleus	71.2	72.54
Os02t0738900-01	Rice	plasma membrane	72.39	72.16
TraesCS6A01G312300.3	Wheat	nucleus	71.3	72.09
TraesCS6B01G342500.2	Wheat	cytosol	68.91	68.69
KXG25176	Sorghum	cytosol	55.76	68.22
Os08t0425100-01	Rice	plasma membrane	56.74	68.15
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	71.85	68.07
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	18.8	65.28
Zm00001d032256_P001	Maize	cytosol	58.04	57.42
Zm00001d051815_P002	Maize	cytosol	32.39	54.28
CDX71832	Canola	cytosol	20.22	29.76
CDY41188	Canola	cytosol	20.11	29.6
CDX89053	Canola	cytosol	20.0	29.39
CDY42672	Canola	cytosol	19.89	29.28
CDY23444	Canola	cytosol	19.46	28.96
CDY30477	Canola	cytosol	19.46	28.96
CDY25074	Canola	cytosol	19.13	28.85
CDX67862	Canola	cytosol	19.02	28.69
CDY27661	Canola	cytosol	18.91	28.52
CDX67529	Canola	cytosol	18.8	28.36
CDY13364	Canola	cytosol	18.8	28.36
CDY33737	Canola	cytosol	18.91	28.34
CDX81675	Canola	cytosol	18.91	28.34
CDX99702	Canola	cytosol	18.7	28.2
CDY52026	Canola	cytosol	18.59	27.85
CDX84001	Canola	cytosol	18.59	27.85
CDX68994	Canola	cytosol	16.96	19.19
CDY46101	Canola	cytosol	16.41	18.8
CDY48440	Canola	cytosol	16.3	18.59
CDY28314	Canola	cytosol	16.2	18.49
CDX75370	Canola	cytosol	16.74	18.33
CDY35023	Canola	cytosol	6.85	18.16
CDX72418	Canola	cytosol	16.3	18.05
CDY35022	Canola	cytosol	5.43	17.42
CDY36456	Canola	cytosol	3.48	17.2
CDY47216	Canola	cytosol	9.67	16.54
CDY23281	Canola	cytosol	6.96	16.16
CDY47217	Canola	cytosol	9.02	16.15
CDY29721	Canola	cytosol	2.72	16.13
CDY53048	Canola	cytosol	8.7	16.0
CDY02039	Canola	cytosol, plastid	9.67	15.92
CDY24536	Canola	cytosol	11.09	15.6
CDY34120	Canola	cytosol	11.09	15.6
CDY03289	Canola	cytosol	8.91	15.53
CDY34117	Canola	cytosol	8.91	15.53
CDY53046	Canola	cytosol	11.3	15.43
CDY33414	Canola	cytosol	11.96	14.16
CDY42203	Canola	cytosol	12.07	14.12
CDY53047	Canola	cytosol	1.41	13.4
CDY25877	Canola	plastid	11.63	13.0
CDY50514	Canola	plastid	9.67	11.62
HORVU4Hr1G074040.2	Barley	nucleus	2.93	10.55
HORVU5Hr1G092990.14	Barley	cytosol	2.93	10.19
CDY24530	Canola	cytosol, nucleus, plasma membrane	6.74	9.78
HORVU4Hr1G073960.12	Barley	cytosol	4.02	9.27
CDY29720	Canola	cytosol, extracellular	3.37	7.24

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	GO:A0A078I907	UniProt:A0A078I907
EnsemblPlants:CDY45889	ProteinID:CDY45889	ProteinID:CDY45889.1	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00082867001
InterPro:G_DYNAMIN_dom	InterPro:IPR001849	InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase
PFAM:PF00169	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF57	SMART:SM00053	SMART:SM00233	SUPFAM:SSF50729	SUPFAM:SSF52540	UniParc:UPI0004EDCB0F
SEG:seg	:	:	:	:	:

Description

BnaC01g28250DBnaC01g28250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I907]

Coordinates

chrLK032640:+:113933..121351

Molecular Weight (calculated)

100005.0 Da

IEP (calculated)

9.431

GRAVY (calculated)

-0.532

Length

920 amino acids

Sequence
(BLAST)

001: MAAIDELSQL SDSMRQAAAL LADEDPDESS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKSQ
101: QVSASALRHS LQDRLSKGAT GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDSDSTRTV
201: GIISKIDQAA ENPKALAAVQ ALLSNQGPPK TTDIPWVALI GQSVAIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILSGLQ GKSQIVQDEL SRLGEQLVSS AEGTKAIALE LCREFEDKFL LHLTGGEGSG WKVVASFEGN FPNRIKQLPL DRYFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKIVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRRED ELKGRSSRKG QDAEQSLLNR ASSPQPEGSS TGGSLKSLKD KFLPQDKDKD KDKETPEVSG LKTAGPEGEI TAGYLLKKSA KTNGWSRRWF
601: VLNEKTGKLG YTKKQEERNF RGTVTLEECS IEEISDDEGE KSKSSKDKKS NGPDSKGPGL VFKITCRVPY KTVLKAHNAL VLKAESMVDK NEWINKLQKV
701: IQARGGQVGG ASMRQSLSEG SLDKMVRKPV DPEEELRWMS QEVRGYVEAV LNSLAANVPK AVVLCQVEKS KEDMLNQLYS SISAIGNERI ESLIQEDQNV
801: KRKRDRYEKQ SSLLSKLTRQ LSIHDNRAAA ASSWSDSGTE SSPKTNGGST GEDWMNAFNA AASGPDSLKR YGSGGHSRRY SDPAQNGEDD SSGSGGSNRR
901: TTPNRLPPAP PQSGGSSYRY

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.