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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX93442
CDX94909
CDX94910
CDY04455 plasma membrane
CDY20643
CDY27283 plasma membrane
CDY31035
CDY34897
CDY44550 plasma membrane
CDY45889 plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G10290.1 CDX93442 AT1G10290.1 25462567
AT1G10290.1 CDX94909 AT1G10290.1 25462567
AT1G10290.1 CDX94910 AT1G10290.1 25462567
AT1G10290.1 CDY20643 AT1G10290.1 25462567
AT1G10290.1 CDY31035 AT1G10290.1 25462567
AT1G10290.1 CDY34897 AT1G10290.1 25462567
AT1G10290.1 CDY04455 AT1G59610.1 25462567
AT1G10290.1 CDY27283 AT1G59610.1 25462567
AT1G10290.1 CDY44550 AT1G59610.1 25462567
AT1G10290.1 CDY45889 AT1G59610.1 25462567
AT1G10290.1 CDY04455 AT1G59610.1 25462567
AT1G10290.1 CDY27283 AT1G59610.1 25462567
AT1G10290.1 CDY44550 AT1G59610.1 25462567
AT1G10290.1 CDY45889 AT1G59610.1 25462567
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY20643 Canola cytosol 98.08 97.0
CDX94910 Canola cytosol 69.01 90.95
VIT_15s0107g00170.t01 Wine grape cytosol 26.52 70.64
Bra018449.1-P Field mustard cytosol 99.36 68.13
CDX93442 Canola cytosol 93.93 64.54
CDY34897 Canola cytosol 93.93 64.26
AT1G10290.1 Thale cress cytosol 93.61 64.11
CDY04455 Canola cytosol 90.26 61.55
CDY45889 Canola cytosol 89.94 61.2
VIT_19s0015g02240.t01 Wine grape golgi, mitochondrion, plasma membrane 25.72 60.75
CDY44550 Canola cytosol 90.42 58.71
CDY27283 Canola cytosol 69.81 57.27
KXG25176 Sorghum cytosol 68.37 56.91
CDX94909 Canola mitochondrion 64.7 55.71
Os08t0425100-01 Rice plasma membrane 68.05 55.61
VIT_18s0089g00350.t01 Wine grape cytosol 81.79 54.99
GSMUA_Achr1P18350_001 Banana cytosol 77.96 54.59
KRH36411 Soybean endoplasmic reticulum, nucleus 80.19 54.45
KRH27552 Soybean cytosol 80.03 54.34
EER88160 Sorghum cytosol, endoplasmic reticulum, nucleus 78.11 53.56
GSMUA_Achr7P05530_001 Banana nucleus 78.43 53.31
Zm00001d037279_P005 Maize plasma membrane 77.64 53.23
GSMUA_Achr4P20040_001 Banana cytosol 77.8 52.99
HORVU7Hr1G040670.2 Barley cytosol, nucleus, plasma membrane 76.2 52.88
TraesCS7D01G200900.1 Wheat golgi, unclear 76.2 52.82
TraesCS7B01G104500.1 Wheat golgi, unclear 76.04 52.71
TraesCS7A01G198100.1 Wheat cytosol, nucleus, plasma membrane 76.04 52.71
Zm00001d044757_P006 Maize cytosol, nucleus, plasma membrane 76.68 52.57
Os06t0247800-01 Rice plasma membrane 76.2 52.36
Zm00001d017979_P002 Maize extracellular, mitochondrion 77.0 52.33
EES05560 Sorghum nucleus 76.52 52.01
GSMUA_Achr3P01090_001 Banana nucleus 75.88 51.74
Os02t0738900-01 Rice plasma membrane 75.4 51.14
TraesCS6D01G291700.1 Wheat nucleus 72.84 50.5
TraesCS6A01G312300.3 Wheat nucleus 73.32 50.44
TraesCS6B01G342500.2 Wheat cytosol 73.32 49.73
HORVU6Hr1G077000.1 Barley cytosol, mitochondrion, nucleus 73.8 47.58
Zm00001d032256_P001 Maize cytosol 63.74 42.9
Zm00001d051815_P002 Maize cytosol 29.07 33.15
CDY42672 Canola cytosol 25.72 25.76
CDX71832 Canola cytosol 25.72 25.76
CDX89053 Canola cytosol 25.72 25.72
CDY41188 Canola cytosol 25.56 25.6
CDY25074 Canola cytosol 24.6 25.25
CDX67862 Canola cytosol 24.44 25.08
CDX81675 Canola cytosol 24.28 24.76
CDY33737 Canola cytosol 24.28 24.76
CDX99702 Canola cytosol 24.12 24.75
CDY23444 Canola cytosol 24.28 24.6
CDX67529 Canola cytosol 23.96 24.59
CDY13364 Canola cytosol 23.96 24.59
CDY27661 Canola cytosol 23.96 24.59
CDY30477 Canola cytosol 24.12 24.43
CDX84001 Canola cytosol 23.96 24.43
CDY52026 Canola cytosol 23.96 24.43
CDY35022 Canola cytosol 8.63 18.82
CDY35023 Canola cytosol 9.74 17.58
CDY29721 Canola cytosol 3.99 16.13
CDY47216 Canola cytosol 13.58 15.8
CDY36456 Canola cytosol 4.63 15.59
CDY53048 Canola cytosol 12.3 15.4
CDY48440 Canola cytosol 19.33 14.99
CDY28314 Canola cytosol 19.17 14.89
CDX68994 Canola cytosol 19.33 14.88
CDY46101 Canola cytosol 18.85 14.69
CDY47217 Canola cytosol 11.82 14.4
CDX72418 Canola cytosol 19.01 14.32
CDX75370 Canola cytosol 19.17 14.29
CDY24536 Canola cytosol 13.74 13.15
CDY34120 Canola cytosol 13.74 13.15
CDY53046 Canola cytosol 13.9 12.91
CDY02039 Canola cytosol, plastid 11.5 12.88
CDY23281 Canola cytosol 7.83 12.37
CDY03289 Canola cytosol 10.38 12.31
CDY34117 Canola cytosol 10.38 12.31
CDY33414 Canola cytosol 14.7 11.84
CDY42203 Canola cytosol 14.7 11.7
CDY25877 Canola plastid 13.9 10.57
HORVU4Hr1G074040.2 Barley nucleus 4.15 10.16
HORVU5Hr1G092990.14 Barley cytosol 4.15 9.81
CDY50514 Canola plastid 11.34 9.27
CDY24530 Canola cytosol, nucleus, plasma membrane 8.47 8.36
HORVU4Hr1G073960.12 Barley cytosol 5.11 8.02
CDY29720 Canola cytosol, extracellular 2.88 4.21
CDY53047 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.20.120.1240Gene3D:2.30.29.30MapMan:22.1.7.2Gene3D:3.40.50.300GO:A0A078GX65UniProt:A0A078GX65
EnsemblPlants:CDY31035ProteinID:CDY31035ProteinID:CDY31035.1ncoils:CoilInterPro:Dynamin_GTPaseInterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SFInterPro:Dynamin_centralGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005525GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00047107001InterPro:G_DYNAMIN_domInterPro:IPR001849
InterPro:IPR011993InterPro:IPR030381InterPro:P-loop_NTPasePFAM:PF00350PFAM:PF01031InterPro:PH-like_dom_sf
InterPro:PH_domainPRINTS:PR00195ScanProsite:PS00410PFscan:PS50003PFscan:PS51718PANTHER:PTHR11566
PANTHER:PTHR11566:SF57SMART:SM00053SUPFAM:SSF50729SUPFAM:SSF52540UniParc:UPI0004EE3CEESEG:seg
Description
BnaA08g25850DBnaA08g25850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GX65]
Coordinates
chrLK032267:-:68..4794
Molecular Weight (calculated)
67933.4 Da
IEP (calculated)
9.570
GRAVY (calculated)
-0.360
Length
626 amino acids
Sequence
(BLAST)
001: MEAIDELSQL SDSMKQAASL LADEDPDETS SSSRRPATFL NVVALGNVGA GKSAVLNSLI GHAILPTGEN GATRAPIIVD LSRESSLSSK AIILQIDNKS
101: QQVSATALRH NLQDRLGKAA PGKNRDEIYL KLRTSTAPPL KLVDLPGLDQ RIVDDSMIAE YAQHNDAILL VIIPANQASE ISSSRALKIA KEHDPESTRT
201: VGIIGKIDQA EGNAKALAAV LALLSNQGPP KTTDIPWVAL IGQSVSIASA AQSGSGENSL ETAWRAESES LNKTLTGAPQ SKLGRNALVE TLASQIRSRM
301: KLRLPNILSG LQGKSQMVQN ELARLGEQLV DSAEGTRAIA LELCREFEEK FLLHLAGGEG SGWKVVASFE GNFPNRIKQL PLDRHFDLNN VKRVVLEADG
401: YQPYLISPEK GLRSLIKIVL EMAKDPARLC VDEVHRVLVD IVSASANATP GLGRYPPFKR EVVAIASAAL DGFKNEAKKM VVALVDMERA FVPPQHFIRL
501: VQRRMERQRR EDELKGRSSK KGQDAEQSLL SRASSPQPDG PIAGGSMKSM KDKPSPQDKE TPEVSGLKTA GPEGEITAGY LMKKSAKTNG WSRRWFVLNE
601: KTGKLGYTKK QEERNFRGTI TLEVSY
Best Arabidopsis Sequence Match ( AT1G10290.1 )
(BLAST)
001: MEAIDELSQL SDSMKQAASL LADEDPDETS SSKRPATFLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIEL SRESSLSSKA IILQIDNKSQ
101: QVSASALRHS LQDRLSKGAS GKNRDEINLK LRTSTAPPLK LVDLPGLDQR IVDESMIAEY AQHNDAILLV IVPASQASEI SSSRALKIAK EYDPESTRTI
201: GIIGKIDQAA ENSKALAAVQ ALLSNQGPPK TTDIPWVAVI GQSVSIASAQ SGSGENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPSVLSGLQ GKSQIVQDEL ARLGEQLVNS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKQLPL DRHFDLNNVK RVVLEADGYQ
401: PYLISPEKGL RSLIKIVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLSR ATSPQPDGPT AGGSLKSMKD KPSPQDKETP EVSGLKTAGP EGEITAGYLM KKSAKTNGWS RRWFVLNEKT
601: GKLGYTKKQE ERNFRGTITL EECTIEEIPE DEVEKSKSSK DKKANGPDSK GPGLVFKITC KVPYKTVLKA HNALVLKAES VVDKNEWINK LQKVIQARGG
701: QVGSVSMRQS LSEGSLDKMV RKPIDPEEEL RWMSQEVRGY VEAVLNSLAA NVPKAVVLCQ VEKAKEDMLN QLYSSISAIG NERIESLIQE DQNVKRRRER
801: YQKQSSLLSK LTRQLSIHDN RAAAASSYSD NSGTESSPRA SGGSSGDDWM NAFNSAANGP SDSLSKYGSG GHSRRYSDPA QNGDAASPGS GSNRRTTPNR
901: LPPAPPPTGS AYRY
Arabidopsis Description
DRP2ADRP2A [Source:UniProtKB/TrEMBL;Acc:A0A178WBB3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.