CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67529
CDX81675
CDX84001
CDX99702
CDY04455
CDY07049
CDY07629
CDY13364
CDY20508
CDY27283
CDY27661
CDY33737
CDY44550
CDY45889
CDY52026
CDY60337
CDY61712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59610.1	CDX81675	AT1G14830.1	21798944
AT1G59610.1	CDX84001	AT1G14830.1	21798944
AT1G59610.1	CDY33737	AT1G14830.1	21798944
AT1G59610.1	CDY52026	AT1G14830.1	21798944
AT1G59610.1	CDY04455	AT1G59610.1	25462567
AT1G59610.1	CDY27283	AT1G59610.1	25462567
AT1G59610.1	CDY44550	AT1G59610.1	25462567
AT1G59610.1	CDY45889	AT1G59610.1	25462567
AT1G59610.1	CDY07049	AT2G40060.1	20231465
AT1G59610.1	CDY07629	AT2G40060.1	20231465
AT1G59610.1	CDY20508	AT2G40060.1	20231465
AT1G59610.1	CDY60337	AT2G40060.1	20231465
AT1G59610.1	CDY61712	AT2G40060.1	20231465
AT1G59610.1	CDX67529	AT5G42080.1	20231465
AT1G59610.1	CDX99702	AT5G42080.1	20231465
AT1G59610.1	CDY13364	AT5G42080.1	20231465
AT1G59610.1	CDY27661	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94909	Canola	mitochondrion	81.65	85.69
CDY04455	Canola	cytosol	94.89	78.87
CDY45889	Canola	cytosol	94.36	78.26
AT1G59610.1	Thale cress	cytosol	93.58	77.61
CDX93442	Canola	cytosol	88.99	74.53
CDY44550	Canola	cytosol	94.1	74.48
CDY34897	Canola	cytosol	88.6	73.88
CDY31035	Canola	cytosol	57.27	69.81
CDY20643	Canola	cytosol	57.41	69.19
CDX94910	Canola	cytosol	40.63	65.26
VIT_18s0089g00350.t01	Wine grape	cytosol	78.24	64.12
KRH27552	Soybean	cytosol	76.8	63.56
KRH36411	Soybean	endoplasmic reticulum, nucleus	76.67	63.45
GSMUA_Achr7P05530_001	Banana	nucleus	74.44	61.67
GSMUA_Achr1P18350_001	Banana	cytosol	71.95	61.41
GSMUA_Achr4P20040_001	Banana	cytosol	73.53	61.04
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	72.08	60.24
Zm00001d037279_P005	Maize	plasma membrane	71.82	60.02
GSMUA_Achr3P01090_001	Banana	nucleus	72.21	60.02
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	71.56	59.8
EES05560	Sorghum	nucleus	71.82	59.5
Os06t0247800-01	Rice	plasma membrane	71.04	59.5
TraesCS7D01G200900.1	Wheat	golgi, unclear	70.38	59.47
Zm00001d017979_P002	Maize	extracellular, mitochondrion	71.69	59.39
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	70.25	59.36
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	69.99	59.2
TraesCS6D01G291700.1	Wheat	nucleus	69.99	59.14
TraesCS7B01G104500.1	Wheat	golgi, unclear	69.99	59.14
TraesCS6A01G312300.3	Wheat	nucleus	70.12	58.79
Os02t0738900-01	Rice	plasma membrane	69.72	57.64
TraesCS6B01G342500.2	Wheat	cytosol	67.63	55.9
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	70.51	55.41
Os08t0425100-01	Rice	plasma membrane	55.31	55.09
KXG25176	Sorghum	cytosol	53.6	54.39
Zm00001d051815_P002	Maize	cytosol	36.57	50.82
Zm00001d032256_P001	Maize	cytosol	56.88	46.67
VIT_15s0107g00170.t01	Wine grape	cytosol	11.14	36.17
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	12.06	34.72
CDX71832	Canola	cytosol	20.31	24.8
CDY41188	Canola	cytosol	20.18	24.64
CDX89053	Canola	cytosol	19.92	24.28
CDY42672	Canola	cytosol	19.79	24.16
CDY25074	Canola	cytosol	18.87	23.61
CDX67862	Canola	cytosol	18.74	23.44
CDY23444	Canola	cytosol	18.87	23.3
CDY30477	Canola	cytosol	18.87	23.3
CDY27661	Canola	cytosol	18.61	23.28
CDX67529	Canola	cytosol	18.48	23.11
CDY13364	Canola	cytosol	18.48	23.11
CDX81675	Canola	cytosol	18.48	22.96
CDY33737	Canola	cytosol	18.48	22.96
CDX99702	Canola	cytosol	18.35	22.95
CDY52026	Canola	cytosol	18.22	22.64
CDX84001	Canola	cytosol	18.22	22.64
CDY36456	Canola	cytosol	4.06	16.67
CDX68994	Canola	cytosol	16.38	15.38
CDY46101	Canola	cytosol	16.12	15.32
CDX75370	Canola	cytosol	16.25	14.76
CDX72418	Canola	cytosol	15.99	14.68
CDY48440	Canola	cytosol	15.47	14.62
CDY03289	Canola	cytosol	10.09	14.58
CDY34117	Canola	cytosol	10.09	14.58
CDY28314	Canola	cytosol	15.33	14.52
CDY29721	Canola	cytosol	2.75	13.55
CDY53047	Canola	cytosol	1.7	13.4
CDY47216	Canola	cytosol	8.13	11.52
CDY02039	Canola	cytosol, plastid	8.39	11.45
CDY53046	Canola	cytosol	10.09	11.42
CDY24536	Canola	cytosol	9.7	11.31
CDY34120	Canola	cytosol	9.7	11.31
CDY35023	Canola	cytosol	4.98	10.95
CDY53048	Canola	cytosol	7.08	10.8
CDY47217	Canola	cytosol	7.21	10.7
CDY42203	Canola	cytosol	11.01	10.69
CDY33414	Canola	cytosol	10.88	10.68
CDY25877	Canola	plastid	10.48	9.72
CDY23281	Canola	cytosol	4.85	9.34
CDY50514	Canola	plastid	9.04	9.01
HORVU4Hr1G074040.2	Barley	nucleus	3.01	8.98
CDY35022	Canola	cytosol	3.28	8.71
HORVU5Hr1G092990.14	Barley	cytosol	3.01	8.68
HORVU4Hr1G073960.12	Barley	cytosol	4.33	8.27
CDY29720	Canola	cytosol, extracellular	3.93	7.01
CDY24530	Canola	cytosol, nucleus, plasma membrane	5.77	6.94

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	GO:A0A078GRK7	UniProt:A0A078GRK7
EnsemblPlants:CDY27283	ProteinID:CDY27283	ProteinID:CDY27283.1	ncoils:Coil	InterPro:Dynamin_SF	InterPro:Dynamin_central
InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00037181001	InterPro:G_DYNAMIN_dom	InterPro:IPR001849
InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00169	PFAM:PF00350
PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain	PFscan:PS50003	PFscan:PS51388
PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF57	SMART:SM00233	SUPFAM:SSF50729	SUPFAM:SSF52540
UniParc:UPI0004EF4901	SEG:seg	:	:	:	:

Description

BnaC04g18630DBnaC04g18630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRK7]

Coordinates

chrLK032202:+:188995..195373

Molecular Weight (calculated)

83660.7 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.461

Length

763 amino acids

Sequence
(BLAST)

001: MCFSYLFNSE APPLKLIDLP GLDQRIVDDS MIGEHAQHND AILLVVVPAS QASEISSSRA LKIAKEYDSD STRTVGIISK IDQAAENPKA LAAVQALLSN
101: QGPPKTTDIP WVALIGQSVS IASAQSGGSE NSLETAWRAE TESLKSILTG APQSKLGRIA LVDTLASQIR SRMKLRLPNI LSGLQGKSQV VQDELARLGE
201: QLVSSVEGTR AIALELCREF EDKFLLHLAG GEGSGWKVVA SFEGNFPNRI KQLPLDRYFD LNNVKRIVLE ADGYQPYLIS PEKGLRSLIK IVLELAKDPA
301: RLCVDEVHRV LVDIVSASAN ATPGLGRYPP FKREVVAIAS AALDGFKNEA KKMVVALVDM ERAFVPPQHF IRLVQRRMER QRREDELKGR SSKKGQDAEQ
401: SLLNRASSPQ PDETPEVSGL KTAGPEGEIT AGYLMKKSAK TNGWSRRWFV LNEKTGKLGY TKKQEEGNFR GTVTLEVSFS SNIYFSLVEK SKSSKDKKSN
501: GPDSKGPGLV FKITCRVPYK TVLKAHNALI LKAESMVDKN EWINKLQKVI RARGGQVGGA SMRHSLSEGS LDKMVRKPVD PEEELRWMSQ EVRGYVEAVL
601: NSLAANVPKA IVLCQVEKSK EDMLNQLYSS ISAIGNERIE SLIQEDQNVK RKRDRYQKQS SLLSKLTRQL SIHDNRAAAA SSWSDSGTAA REPMEAWMNA
701: FNAAASGPDS LKRYGSGGHS RRYSDPVQNG EDDSSGSGGS NRRTTPNRLP PAPPQSGGSS YGY

Best Arabidopsis Sequence Match ( AT1G10290.1 )
(BLAST)

001: MEAIDELSQL SDSMKQAASL LADEDPDETS SSKRPATFLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIEL SRESSLSSKA IILQIDNKSQ
101: QVSASALRHS LQDRLSKGAS GKNRDEINLK LRTSTAPPLK LVDLPGLDQR IVDESMIAEY AQHNDAILLV IVPASQASEI SSSRALKIAK EYDPESTRTI
201: GIIGKIDQAA ENSKALAAVQ ALLSNQGPPK TTDIPWVAVI GQSVSIASAQ SGSGENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPSVLSGLQ GKSQIVQDEL ARLGEQLVNS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKQLPL DRHFDLNNVK RVVLEADGYQ
401: PYLISPEKGL RSLIKIVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLSR ATSPQPDGPT AGGSLKSMKD KPSPQDKETP EVSGLKTAGP EGEITAGYLM KKSAKTNGWS RRWFVLNEKT
601: GKLGYTKKQE ERNFRGTITL EECTIEEIPE DEVEKSKSSK DKKANGPDSK GPGLVFKITC KVPYKTVLKA HNALVLKAES VVDKNEWINK LQKVIQARGG
701: QVGSVSMRQS LSEGSLDKMV RKPIDPEEEL RWMSQEVRGY VEAVLNSLAA NVPKAVVLCQ VEKAKEDMLN QLYSSISAIG NERIESLIQE DQNVKRRRER
801: YQKQSSLLSK LTRQLSIHDN RAAAASSYSD NSGTESSPRA SGGSSGDDWM NAFNSAANGP SDSLSKYGSG GHSRRYSDPA QNGDAASPGS GSNRRTTPNR
901: LPPAPPPTGS AYRY

Arabidopsis Description

DRP2ADRP2A [Source:UniProtKB/TrEMBL;Acc:A0A178WBB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.