CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88160	plasma membrane
EES01270
EES05560	plasma membrane
EES19921
KXG25176	plasma membrane
KXG37727

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	EER88160	AT1G10290.1	25462567
AT1G10290.1	EES05560	AT1G10290.1	25462567
AT1G10290.1	KXG25176	AT1G10290.1	25462567
AT1G10290.1	EER88160	AT1G59610.1	25462567
AT1G10290.1	EES05560	AT1G59610.1	25462567
AT1G10290.1	KXG25176	AT1G59610.1	25462567
AT1G10290.1	EER88160	AT1G59610.1	25462567
AT1G10290.1	EES05560	AT1G59610.1	25462567
AT1G10290.1	KXG25176	AT1G59610.1	25462567
AT1G59610.1	KXG37727	AT1G14830.1	21798944
AT1G59610.1	EER88160	AT1G59610.1	25462567
AT1G59610.1	EES05560	AT1G59610.1	25462567
AT1G59610.1	KXG25176	AT1G59610.1	25462567
AT1G59610.1	EES01270	AT5G42080.1	20231465
AT1G59610.1	EES19921	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017979_P002	Maize	extracellular, mitochondrion	97.29	97.29
Os02t0738900-01	Rice	plasma membrane	89.79	89.6
TraesCS6D01G291700.1	Wheat	nucleus	87.41	89.15
TraesCS6A01G312300.3	Wheat	nucleus	87.62	88.68
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	85.45	86.2
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	88.06	83.52
TraesCS6B01G342500.2	Wheat	cytosol	82.41	82.23
GSMUA_Achr7P05530_001	Banana	nucleus	78.18	78.18
GSMUA_Achr1P18350_001	Banana	cytosol	75.57	77.85
GSMUA_Achr4P20040_001	Banana	cytosol	77.52	77.69
CDX94910	Canola	cytosol	39.74	77.05
VIT_18s0089g00350.t01	Wine grape	cytosol	77.63	76.8
CDY31035	Canola	cytosol	52.01	76.52
CDY20643	Canola	cytosol	52.12	75.83
GSMUA_Achr3P01090_001	Banana	nucleus	75.03	75.27
KRH27552	Soybean	cytosol	74.81	74.73
AT1G59610.1	Thale cress	cytosol	74.48	74.57
KRH36411	Soybean	endoplasmic reticulum, nucleus	74.48	74.4
AT1G10290.1	Thale cress	cytosol	73.72	74.29
CDY45889	Canola	cytosol	73.72	73.8
CDY04455	Canola	cytosol	73.51	73.75
Bra018449.1-P	Field mustard	cytosol	72.86	73.49
CDX93442	Canola	cytosol	72.64	73.44
Bra031707.1-P	Field mustard	cytosol	71.99	72.46
CDY34897	Canola	cytosol	71.99	72.46
Bra017901.1-P	Field mustard	cytosol	73.72	71.85
CDY27283	Canola	cytosol	59.5	71.82
CDX94909	Canola	mitochondrion	56.46	71.53
Bra019950.1-P	Field mustard	cytosol	72.64	71.25
KXG25176	Sorghum	cytosol	57.87	70.88
CDY44550	Canola	cytosol	73.72	70.44
VIT_15s0107g00170.t01	Wine grape	cytosol	17.92	70.21
Bra035433.1-P	Field mustard	cytosol	73.51	67.63
VIT_00s0267g00020.t01	Wine grape	cytosol	10.86	63.69
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	17.81	61.89
KXG38886	Sorghum	cytosol	19.76	28.89
EER98546	Sorghum	cytosol	19.22	28.37
KXG37727	Sorghum	cytosol, mitochondrion	18.78	28.27
EES19921	Sorghum	cytosol	18.68	28.24
EES01270	Sorghum	cytosol	18.35	27.75
OQU81360	Sorghum	cytosol	16.18	19.71
EES04116	Sorghum	cytosol	17.48	19.66
EER95148	Sorghum	cytosol	12.05	16.4
KXG39737	Sorghum	cytosol	10.75	15.14
EES03602	Sorghum	plastid	12.16	13.58
EES16755	Sorghum	cytosol	11.07	13.47

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	EntrezGene:8068607	UniProt:C5XZ82
ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	EnsemblPlants:EES05560
ProteinID:EES05560	ProteinID:EES05560.1	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR001849	InterPro:IPR011993
InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00169	PFAM:PF00350	PFAM:PF01031
PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF134	SMART:SM00053	SMART:SM00233
EnsemblPlantsGene:SORBI_3004G244500	SUPFAM:SSF50729	SUPFAM:SSF52540	unigene:Sbi.21177	UniParc:UPI0001A853C5	RefSeq:XP_002452584.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:59210396..59226741

Molecular Weight (calculated)

100315.0 Da

IEP (calculated)

9.735

GRAVY (calculated)

-0.564

Length

921 amino acids

Sequence
(BLAST)

001: MSSAAAMEAI DELVQLSESM RQAASLLADD DPSDETASRR PSTFLNAVAL GNVGAGKSAV LNSLIGHPVL PTGENGATRA PIVVDLARDP GLSTKSIVLQ
101: IDSKSQQVSA SALRHSLQDR LSKGASSGSG RSRSDEIYLK LRTSTAPPLK LIDLPGIDQR VMDDSTISEY AGHNDALLIV VIPAMQAADV ASSRALRLAK
201: DIDPDGTRTI GVLSKIDQAA ADAKTVSCVQ AILSNKGAPR AAADIEWVAL IGQSVSIASA QSGSVGSDNS LETAWRAEAE TLKSILTGAP QSKLGRIALV
301: DTIAKQIRKR MKVRLPNLLT GLQGKSQIVQ DELARLGEQM VQSAEGTRAV ALELCREFED KFLAHITSGE GSGWKIVASF EGKFPDRIKQ LPLDRHFDLN
401: NVKRIVLEAD GYQPYLISPE KGLRSLIKGV LEMAKEPSRL CVEEVHRVLL DIVNAAANAT PGLGRYPPFK REVITIASNA LDAFKSDAKK MVVALVDMER
501: AFVPPQHFIR LVQRRMERQR REDELRNNRS SKKGHDAEQS KMNRASSPQT GSDEAGGNLK SMKDKSNQQE KDTKEGPNLQ VAGPGGEITA GYLLKKSAKN
601: NDWSKRWFVL NEKSGKLGYT KKQEERHFRG VIVLEECNLE EIEEEEVSKN SKDSKKANGQ EKGPSLVFKI TNRVAYKSVL KAHSAVILKA ESMADKIEWI
701: KKIKGVIQSR GGSVKGPTED GSMRQSRSDG SLDTMARRPA DPEEELRWMS QEVRGYVEAV LNSLAANVPK AIVLCQVEKS KEDMLNQLYS SVSAQSNAKI
801: EELLQEDHNA KRRREKYQKQ SSLLSKLTRQ LSIHDNRAAS YANDSSGAES SPRSPGNSGE DWKSAFDSAA NGSVDRSSSQ HETRSRSADS RGRRHENGDA
901: NSGSRRTPNR LPPAPPSGGR Y

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.