Factsheet for Zm00001d017979_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 22192489
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009504_P002
Zm00001d013426_P002
Zm00001d017979_P002	plasma membrane
Zm00001d032256_P001	plasma membrane
Zm00001d033751_P003
Zm00001d037279_P005	plasma membrane
Zm00001d038955_P001
Zm00001d044757_P006	plasma membrane
Zm00001d051815_P002	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	Zm00001d017979_P002	AT1G10290.1	25462567
AT1G10290.1	Zm00001d032256_P001	AT1G10290.1	25462567
AT1G10290.1	Zm00001d037279_P005	AT1G10290.1	25462567
AT1G10290.1	Zm00001d044757_P006	AT1G10290.1	25462567
AT1G10290.1	Zm00001d051815_P002	AT1G10290.1	25462567
AT1G10290.1	Zm00001d017979_P002	AT1G59610.1	25462567
AT1G10290.1	Zm00001d032256_P001	AT1G59610.1	25462567
AT1G10290.1	Zm00001d037279_P005	AT1G59610.1	25462567
AT1G10290.1	Zm00001d044757_P006	AT1G59610.1	25462567
AT1G10290.1	Zm00001d051815_P002	AT1G59610.1	25462567
AT1G10290.1	Zm00001d017979_P002	AT1G59610.1	25462567
AT1G10290.1	Zm00001d032256_P001	AT1G59610.1	25462567
AT1G10290.1	Zm00001d037279_P005	AT1G59610.1	25462567
AT1G10290.1	Zm00001d044757_P006	AT1G59610.1	25462567
AT1G10290.1	Zm00001d051815_P002	AT1G59610.1	25462567
AT1G59610.1	Zm00001d013426_P002	AT1G14830.1	21798944
AT1G59610.1	Zm00001d033751_P003	AT1G14830.1	21798944
AT1G59610.1	Zm00001d017979_P002	AT1G59610.1	25462567
AT1G59610.1	Zm00001d032256_P001	AT1G59610.1	25462567
AT1G59610.1	Zm00001d037279_P005	AT1G59610.1	25462567
AT1G59610.1	Zm00001d044757_P006	AT1G59610.1	25462567
AT1G59610.1	Zm00001d051815_P002	AT1G59610.1	25462567
AT1G59610.1	Zm00001d009504_P002	AT5G42080.1	20231465
AT1G59610.1	Zm00001d038955_P001	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05560	Sorghum	nucleus	97.29	97.29
Os02t0738900-01	Rice	plasma membrane	89.69	89.49
TraesCS6D01G291700.1	Wheat	nucleus	86.64	88.37
TraesCS6A01G312300.3	Wheat	nucleus	87.19	88.24
Zm00001d037279_P005	Maize	plasma membrane	85.23	85.98
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	84.36	85.1
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	87.41	82.9
TraesCS6B01G342500.2	Wheat	cytosol	81.98	81.8
GSMUA_Achr7P05530_001	Banana	nucleus	77.74	77.74
GSMUA_Achr4P20040_001	Banana	cytosol	76.98	77.15
GSMUA_Achr1P18350_001	Banana	cytosol	74.81	77.07
CDX94910	Canola	cytosol	39.74	77.05
CDY31035	Canola	cytosol	52.33	77.0
VIT_18s0089g00350.t01	Wine grape	cytosol	77.2	76.37
CDY20643	Canola	cytosol	52.44	76.3
GSMUA_Achr3P01090_001	Banana	nucleus	74.27	74.51
KRH27552	Soybean	cytosol	74.48	74.4
AT1G59610.1	Thale cress	cytosol	74.27	74.35
AT1G10290.1	Thale cress	cytosol	73.62	74.18
KRH36411	Soybean	endoplasmic reticulum, nucleus	74.16	74.08
CDY45889	Canola	cytosol	73.72	73.8
CDY04455	Canola	cytosol	73.51	73.75
CDX93442	Canola	cytosol	72.64	73.44
Bra018449.1-P	Field mustard	cytosol	72.75	73.38
CDY34897	Canola	cytosol	71.88	72.35
Bra031707.1-P	Field mustard	cytosol	71.88	72.35
Bra017901.1-P	Field mustard	cytosol	73.72	71.85
CDY27283	Canola	cytosol	59.39	71.69
CDX94909	Canola	mitochondrion	56.24	71.25
Bra019950.1-P	Field mustard	cytosol	72.64	71.25
CDY44550	Canola	cytosol	73.72	70.44
VIT_15s0107g00170.t01	Wine grape	cytosol	17.92	70.21
Bra035433.1-P	Field mustard	cytosol	73.51	67.63
VIT_00s0267g00020.t01	Wine grape	cytosol	10.97	64.33
Zm00001d051815_P002	Maize	cytosol	37.46	62.84
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	17.81	61.89
Zm00001d032256_P001	Maize	cytosol	61.56	60.97
Zm00001d030005_P002	Maize	cytosol, mitochondrion	12.49	28.61
Zm00001d033751_P003	Maize	plasma membrane	18.89	28.48
Zm00001d013426_P002	Maize	plasma membrane	18.68	28.15
Zm00001d005306_P002	Maize	cytosol, extracellular, mitochondrion	18.57	27.23
Zm00001d009504_P002	Maize	cytosol	18.78	26.37
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	18.78	25.82
Zm00001d042338_P002	Maize	extracellular, mitochondrion	17.7	19.95
Zm00001d012027_P002	Maize	cytosol	17.7	19.18
Zm00001d028495_P001	Maize	cytosol	11.51	15.73
Zm00001d028497_P001	Maize	cytosol	9.77	14.42
Zm00001d043451_P001	Maize	plastid	12.05	13.49
Zm00001d023583_P005	Maize	plastid	10.75	13.06
Zm00001d012752_P006	Maize	plastid	11.84	12.99
Zm00001d004012_P001	Maize	cytosol	15.31	12.89

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:103627697	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	UniProt:A0A1D6HJQ5
ProteinID:AQK74695.1	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central
InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR001849	InterPro:IPR011993
InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00169	PFAM:PF00350	PFAM:PF01031
PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF134	SMART:SM00053	SMART:SM00233
SUPFAM:SSF50729	SUPFAM:SSF52540	UniParc:UPI0004DEA311	EnsemblPlantsGene:Zm00001d017979	EnsemblPlants:Zm00001d017979_P002	EnsemblPlants:Zm00001d017979_T002
SEG:seg	:	:	:	:	:

Description

Dynamin-2A

Coordinates

chr5:-:211184336..211211518

Molecular Weight (calculated)

100313.0 Da

IEP (calculated)

9.774

GRAVY (calculated)

-0.569

Length

921 amino acids

Sequence
(BLAST)

001: MSSSAAMEAI DELVQLSESM RQAASLLADD DPSDETASRR PSTFLNAVAL GNVGAGKSAV LNSLIGHPVL PTGENGATRA PIVVDLARDP GLSSKSIVLQ
101: IDSKSQQVSA SALRHSLQDR LSKGASSGSG RSRSDEIYLK LRTSTAPPLK LIDLPGIDQR VMDDSTISEY AGHNDALLIV VIPAMQAADV ASSRALRLAK
201: DIDPDGTRTI GVLSKIDQAA ADAKTVSCVQ SILSNKGAPR AAADIEWVAL IGQSVSIASA QSGSVGSDNS LETAWRAEAE TLKSILTGAP QSKLGRIALV
301: DTIAKQIRKR MKVRLPNLLT GLQGKSQIVQ DELARLGEQM VQSAEGTRAV ALELCREFED KFLAHITSGE GSGWKIVASF EGKFPDRIKQ LPLDRHFDLN
401: NVKRIVLEAD GYQPYLISPE KGLRSLIKGV LEMAKEPSRL CVEEVHRVLL DIVNAAANAT PGLGRYPPFK REVIAIASNA LDAFKSDAKK MVVALVDMER
501: AFVPPQHFIR LVQRRMERQR REDELKNNRS SKKGQDAELS KMNRASSPQT GSDEAGGNLK SMKDKSNKQD NDTKEGPNLQ VAGPGGEITA GYLLKKSAKN
601: NEWSKRWFVL NEKSGKLGYT KKQEERHFRG VIVLEECNLE EIEEEEISKS SKDSKKANGQ EKGPSLVFKI TNRVSYKTVL KAHSAVILKA ESMADKIEWI
701: KKIKGVIQSR GGSVKGPTED GPMRQSRSDG SLDTMARRPA DPEEELRWMS QEVRGYVEAV LNSLAANVPK AIVLCQVEKS KEDMLNKLYN SISAQSNAKI
801: EELLQEDHNA KRRREKYQKQ SSLLSKLTRQ LSIHDNRAAS YGNDSSGAEG SPRSPGHSGE DWKSAFDSAT NGSVDRSSSQ HETRSKSADS RGRRHENGDA
901: NSGSRRTPNR LPPAPPNGGR Y

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.