Factsheet for TraesCS6D01G291700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G385400.2
TraesCS1B01G411700.3
TraesCS1D01G393000.2
TraesCS4A01G266600.1
TraesCS4B01G047700.1
TraesCS4D01G047600.1
TraesCS6A01G312300.3	plasma membrane
TraesCS6B01G342500.2	plasma membrane
TraesCS6B01G443600.1
TraesCS6D01G291700.1	plasma membrane
TraesCS6D01G385300.1
TraesCS7A01G198100.1	plasma membrane
TraesCS7B01G104500.1	plasma membrane
TraesCS7D01G200900.1	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	TraesCS6A01G312300.3	AT1G10290.1	25462567
AT1G10290.1	TraesCS6B01G342500.2	AT1G10290.1	25462567
AT1G10290.1	TraesCS6D01G291700.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS7A01G198100.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS7B01G104500.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS7D01G200900.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS6A01G312300.3	AT1G59610.1	25462567
AT1G10290.1	TraesCS6B01G342500.2	AT1G59610.1	25462567
AT1G10290.1	TraesCS6D01G291700.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7A01G198100.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7B01G104500.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7D01G200900.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS6A01G312300.3	AT1G59610.1	25462567
AT1G10290.1	TraesCS6B01G342500.2	AT1G59610.1	25462567
AT1G10290.1	TraesCS6D01G291700.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7A01G198100.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7B01G104500.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7D01G200900.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS4A01G266600.1	AT1G14830.1	21798944
AT1G59610.1	TraesCS4B01G047700.1	AT1G14830.1	21798944
AT1G59610.1	TraesCS4D01G047600.1	AT1G14830.1	21798944
AT1G59610.1	TraesCS6A01G312300.3	AT1G59610.1	25462567
AT1G59610.1	TraesCS6B01G342500.2	AT1G59610.1	25462567
AT1G59610.1	TraesCS6D01G291700.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS7A01G198100.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS7B01G104500.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS7D01G200900.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS1A01G385400.2	AT5G42080.1	20231465
AT1G59610.1	TraesCS1B01G411700.3	AT5G42080.1	20231465
AT1G59610.1	TraesCS1D01G393000.2	AT5G42080.1	20231465
AT1G59610.1	TraesCS6B01G443600.1	AT5G42080.1	20231465
AT1G59610.1	TraesCS6D01G385300.1	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G312300.3	Wheat	nucleus	99.56	98.79
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	98.89	91.97
TraesCS6B01G342500.2	Wheat	cytosol	92.47	90.47
EES05560	Sorghum	nucleus	89.15	87.41
Zm00001d017979_P002	Maize	extracellular, mitochondrion	88.37	86.64
Os02t0738900-01	Rice	plasma membrane	88.48	86.57
TraesCS7D01G200900.1	Wheat	golgi, unclear	82.95	82.95
GSMUA_Achr7P05530_001	Banana	nucleus	77.19	75.68
GSMUA_Achr1P18350_001	Banana	cytosol	74.2	74.94
GSMUA_Achr4P20040_001	Banana	cytosol	75.75	74.43
VIT_18s0089g00350.t01	Wine grape	cytosol	76.41	74.11
CDX94910	Canola	cytosol	38.98	74.11
CDY31035	Canola	cytosol	50.5	72.84
GSMUA_Achr3P01090_001	Banana	nucleus	73.86	72.66
KRH27552	Soybean	cytosol	74.09	72.56
KRH36411	Soybean	endoplasmic reticulum, nucleus	73.86	72.34
CDY20643	Canola	cytosol	50.5	72.04
AT1G59610.1	Thale cress	cytosol	73.31	71.96
AT1G10290.1	Thale cress	cytosol	72.65	71.77
CDY45889	Canola	cytosol	72.54	71.2
CDX93442	Canola	cytosol	71.76	71.13
Bra031707.1-P	Field mustard	cytosol	71.87	70.93
CDY34897	Canola	cytosol	71.87	70.93
CDY04455	Canola	cytosol	71.98	70.81
Bra018449.1-P	Field mustard	cytosol	71.43	70.65
CDY27283	Canola	cytosol	59.14	69.99
CDX94909	Canola	mitochondrion	55.92	69.46
Bra017901.1-P	Field mustard	cytosol	72.43	69.21
Bra019950.1-P	Field mustard	cytosol	71.76	69.01
CDY44550	Canola	cytosol	72.43	67.84
VIT_15s0107g00170.t01	Wine grape	cytosol	17.5	67.23
Bra035433.1-P	Field mustard	cytosol	72.2	65.13
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	17.83	60.75
VIT_00s0267g00020.t01	Wine grape	cytosol	10.41	59.87
TraesCS1D01G216700.2	Wheat	cytosol	19.82	28.64
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	19.16	28.36
TraesCS1D01G393000.2	Wheat	cytosol	18.38	27.26
TraesCS2D01G279900.2	Wheat	cytosol	17.61	20.49
TraesCS3D01G423500.1	Wheat	cytosol	17.72	19.63
TraesCS6D01G385300.1	Wheat	cytosol	10.3	18.79
TraesCS5D01G082000.4	Wheat	cytosol	13.73	18.1
TraesCS4D01G217900.1	Wheat	cytosol	11.74	15.99
TraesCS4D01G098800.1	Wheat	cytosol	11.96	15.79
TraesCS5D01G124800.1	Wheat	cytosol	10.74	12.55
TraesCS3D01G272800.1	Wheat	plastid	11.18	12.36

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:G_DYNAMIN_dom	InterPro:IPR001849	InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase
PFAM:PF00169	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF134	SMART:SM00053	SMART:SM00233	SMART:SM00302	SUPFAM:SSF50729	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS6D01G291700	EnsemblPlants:TraesCS6D01G291700.1	TIGR:cd08771	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:402339770..402349211

Molecular Weight (calculated)

98606.1 Da

IEP (calculated)

9.735

GRAVY (calculated)

-0.554

Length

903 amino acids

Sequence
(BLAST)

001: MDAIVELVEL SESMRQAASL LADDDPSDDA APRRPSTFLN AVALGNVGSG KSAVLNSLIG HPVLPTGENG ATRAPIVVDL QRDPGLSTKS IVLQIDSKSQ
101: QVSSSALRHS LQDRLSKATG PGRSRTDEIY LKLRTSTAPP LKLIDLPGID QRVIDDSTIN EFAGHNDAIL IVVIPAMQAP EVASSRALKL ARDIDPEGTR
201: TIGVLSKIDQ AASDAKTVAC VQAILSNKGP RTAAEIEWVA LIGQSVAIAS AQSGSVGSEN SLETAWRAEA ESLKSILTTA PQNKLGRIAL VDTIAKQIRK
301: RMKVRLPNLL TGLQGKSQVV KDELARLGES MVQSPEGTRA VALELCREFE DKFLAHVTSG EGSGWKIVAS FEGKFPDRIK QLPLDRHFDL NNVKRIVLEA
401: DGYQPYLISP EKGLKSLIKG VLEMAKEPSR LCVEEVHRVL LDIVNATANG TPGLGRYPPF KREIITIASN ALDTFKSDAK KMVVALVDME RAFVPPQHFI
501: RLVQRRMERQ RREEEVKTKS SKKAQDAEQA MMNKEQAKSS KDKSNQQDKD TKEGPNLQVA GPGGEITAGY LLKKSAKNNE WSKRWFVLNE KSGKLGYTKK
601: QEERHFRGVI VLEECNLEEI EEEELSKTSK DSKKANGAEK GPSLVFKITN RVAYKTVLKA HSAVVLKAES MADKIEWVKK IKGIIQSKGG SVKSSNTPEG
701: GSMRQSHSDG SLDTMARRPA DPEEELRWMS QEVRGYVEAV LNSLAANVPK AIVLCQVEKA KEDMLNQLYS SISSQSNARI EELLQEDHNA KRRREKAQKQ
801: STLLSKLTRQ LSVHDNRAAA ASYSDDTSGP ESGPQSPGQS GEDWRSAFSA AANGSADRSS SQNESRSRSA DSRGRRYENG DANGANSGSR RTPNRLPPAP
901: PKY

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.