Factsheet for HORVU6Hr1G077000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G084970.2
HORVU4Hr1G007880.11
HORVU4Hr1G073960.12	plasma membrane
HORVU4Hr1G074040.2	plasma membrane
HORVU5Hr1G092990.14	plasma membrane
HORVU6Hr1G077000.1	plasma membrane
HORVU7Hr1G040670.2	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	HORVU4Hr1G073960.12	AT1G10290.1	25462567
AT1G10290.1	HORVU4Hr1G074040.2	AT1G10290.1	25462567
AT1G10290.1	HORVU5Hr1G092990.14	AT1G10290.1	25462567
AT1G10290.1	HORVU6Hr1G077000.1	AT1G10290.1	25462567
AT1G10290.1	HORVU7Hr1G040670.2	AT1G10290.1	25462567
AT1G10290.1	HORVU4Hr1G073960.12	AT1G59610.1	25462567
AT1G10290.1	HORVU4Hr1G074040.2	AT1G59610.1	25462567
AT1G10290.1	HORVU5Hr1G092990.14	AT1G59610.1	25462567
AT1G10290.1	HORVU6Hr1G077000.1	AT1G59610.1	25462567
AT1G10290.1	HORVU7Hr1G040670.2	AT1G59610.1	25462567
AT1G10290.1	HORVU4Hr1G073960.12	AT1G59610.1	25462567
AT1G10290.1	HORVU4Hr1G074040.2	AT1G59610.1	25462567
AT1G10290.1	HORVU5Hr1G092990.14	AT1G59610.1	25462567
AT1G10290.1	HORVU6Hr1G077000.1	AT1G59610.1	25462567
AT1G10290.1	HORVU7Hr1G040670.2	AT1G59610.1	25462567
AT1G59610.1	HORVU4Hr1G007880.11	AT1G14830.1	21798944
AT1G59610.1	HORVU4Hr1G073960.12	AT1G59610.1	25462567
AT1G59610.1	HORVU4Hr1G074040.2	AT1G59610.1	25462567
AT1G59610.1	HORVU5Hr1G092990.14	AT1G59610.1	25462567
AT1G59610.1	HORVU6Hr1G077000.1	AT1G59610.1	25462567
AT1G59610.1	HORVU7Hr1G040670.2	AT1G59610.1	25462567
AT1G59610.1	HORVU1Hr1G084970.2	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G312300.3	Wheat	nucleus	92.69	98.9
TraesCS6D01G291700.1	Wheat	nucleus	91.97	98.89
TraesCS6B01G342500.2	Wheat	cytosol	86.1	90.57
EES05560	Sorghum	nucleus	83.52	88.06
Os02t0738900-01	Rice	plasma membrane	83.21	87.54
Zm00001d017979_P002	Maize	extracellular, mitochondrion	82.9	87.41
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	76.83	82.71
GSMUA_Achr7P05530_001	Banana	nucleus	72.09	76.0
GSMUA_Achr1P18350_001	Banana	cytosol	69.31	75.28
GSMUA_Achr4P20040_001	Banana	cytosol	70.85	74.86
VIT_18s0089g00350.t01	Wine grape	cytosol	71.37	74.44
CDX94910	Canola	cytosol	36.35	74.32
CDY31035	Canola	cytosol	47.58	73.8
GSMUA_Achr3P01090_001	Banana	nucleus	69.1	73.09
KRH36411	Soybean	endoplasmic reticulum, nucleus	69.31	72.99
KRH27552	Soybean	cytosol	69.21	72.89
CDY20643	Canola	cytosol	47.48	72.83
AT1G59610.1	Thale cress	cytosol	68.28	72.07
AT1G10290.1	Thale cress	cytosol	67.77	71.99
CDY45889	Canola	cytosol	68.07	71.85
CDY04455	Canola	cytosol	67.77	71.68
CDX93442	Canola	cytosol	67.04	71.46
CDY34897	Canola	cytosol	67.04	71.15
Bra031707.1-P	Field mustard	cytosol	67.04	71.15
Bra018449.1-P	Field mustard	cytosol	66.84	71.08
CDY27283	Canola	cytosol	55.41	70.51
Bra017901.1-P	Field mustard	cytosol	68.18	70.05
CDX94909	Canola	mitochondrion	52.32	69.88
Bra019950.1-P	Field mustard	cytosol	67.04	69.33
CDY44550	Canola	cytosol	67.87	68.36
VIT_15s0107g00170.t01	Wine grape	cytosol	16.27	67.23
Bra035433.1-P	Field mustard	cytosol	67.77	65.73
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	16.58	60.75
VIT_00s0267g00020.t01	Wine grape	cytosol	9.68	59.87
HORVU4Hr1G007880.11	Barley	cytosol	18.33	28.03
HORVU1Hr1G054560.1	Barley	mitochondrion	19.46	27.47
HORVU1Hr1G084970.2	Barley	plasma membrane	17.2	24.7
HORVU6Hr1G058700.1	Barley	cytosol	2.37	21.5
HORVU2Hr1G068810.3	Barley	cytosol	17.1	20.85
HORVU3Hr1G094260.4	Barley	cytosol	16.07	19.14
HORVU4Hr1G061820.3	Barley	plastid	11.12	15.88
HORVU3Hr1G071340.9	Barley	cytosol, plastid	10.71	12.12
HORVU1Hr1G001520.1	Barley	cytosol	1.03	11.11
HORVU4Hr1G074040.2	Barley	nucleus	2.78	10.55
HORVU5Hr1G092990.14	Barley	cytosol	2.78	10.19
HORVU4Hr1G073960.12	Barley	cytosol	3.71	9.02
HORVU2Hr1G095510.1	Barley	cytosol	0.72	7.95
HORVU2Hr1G095500.1	Barley	cytosol	0.82	6.78

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	UniProt:A0A287US88	ncoils:Coil
InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	InterPro:G_DYNAMIN_dom	EnsemblPlantsGene:HORVU6Hr1G077000	EnsemblPlants:HORVU6Hr1G077000.1	InterPro:IPR001849	InterPro:IPR011993
InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00169	PFAM:PF00350	PFAM:PF01031
PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF134	SMART:SM00053	SMART:SM00233
SMART:SM00302	SUPFAM:SSF50729	SUPFAM:SSF52540	UniParc:UPI000B474ADD	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:+:527823020..527832437

Molecular Weight (calculated)

105783.0 Da

IEP (calculated)

9.481

GRAVY (calculated)

-0.549

Length

971 amino acids

Sequence
(BLAST)

001: RLRCACQIPF PFPFPEPPYT RPADSNFQES ASNFLATAAP HPTPPPEISP TGLEIPAPMS SSAMDAIVEL VELSESMRQA ASLLADDDPS DDAAPRRPST
101: FLNAVALGNV GSGKSAVLNS LIGHPVLPTG ENGATRAPIV VDLQRDPGLS TKSIVLQIDS KSQQVSSSAL RHSLQDRLSK ATGPGRSRTD EIYLKLRTST
201: APPLKLIDLP GIDQRVIDDS TINEFAGHND AILIVVIPAM QAPEVASSRA LKLARDIDPE GTRTIGVLSK IDQAASDAKT VACVQAILSN KGPRTAAEIE
301: WVALIGQSVA IASAQSGSVG SENSLETAWR AEAESLKSIL TTAPQNKLGR IALVDTIAKQ IRKRMKVRLP NLLSGLQGKS QVVKDELARL GESMVQSPEG
401: TRAVALELCR EFEDKFLAHV TSGEGSGWKI VASFEGKFPD RIKQLPLDRH FDLNNVKRIV LEADGYQPYL ISPEKGLKSL IKGVLEMAKE PSRLCVEEVH
501: RVLLDIVNAT ANGTPGLGRY PPFKREIITI ASNALDTFKS DAKKMVVALV DMERAFVPPQ HFIRLVQRRM ERQRREDEVK TKSSKRAQDA EQSMNKGSEQ
601: SGGSLKSSKD KSNQQDKDTK EGPNLQVAGP GGEITAGYLL KKSAKNNEWS KRWFVLNEKS GKLGYTKKQE ERHFRGVIVL EECNLEEIEE EELSKTSKDS
701: KKANGPEKGP SLLFKITNRV AYKTVLKAHS AVILKAESMA DKIEWVKKIK GIIQSKGGSV KSSNTPEGGS MRQSHSDGSL DTMARRPADP EEELRWMSQE
801: VRGYVEAVLN SLAANVPKAI VLCQVEKAKE DMLNQLYSSI SSQSNARIEE LLQEDHNAKR RREKAQKQST LLSKLTRQLS VHDNRAAAAS YSDDTSGPES
901: GPQSPSQSGE DWRSAFSAAA NGSADRSSSQ NESRSRSADS RGRRYENGDA NGANSGSRRT PNRLPPAPPK Y

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.