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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytosol, golgi, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, golgi
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH27552 plasma membrane
KRH27831
KRH36411 plasma membrane
KRH41321
KRH41722
KRH49665
KRH60047
KRH60421
KRH70357
KRH77654

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G10290.1 KRH27552 AT1G10290.1 25462567
AT1G10290.1 KRH36411 AT1G10290.1 25462567
AT1G10290.1 KRH27552 AT1G59610.1 25462567
AT1G10290.1 KRH36411 AT1G59610.1 25462567
AT1G10290.1 KRH27552 AT1G59610.1 25462567
AT1G10290.1 KRH36411 AT1G59610.1 25462567
AT1G59610.1 KRH41722 AT1G14830.1 21798944
AT1G59610.1 KRH49665 AT1G14830.1 21798944
AT1G59610.1 KRH60421 AT1G14830.1 21798944
AT1G59610.1 KRH70357 AT1G14830.1 21798944
AT1G59610.1 KRH27552 AT1G59610.1 25462567
AT1G59610.1 KRH36411 AT1G59610.1 25462567
AT1G59610.1 KRH27831 AT5G42080.1 20231465
AT1G59610.1 KRH41321 AT5G42080.1 20231465
AT1G59610.1 KRH60047 AT5G42080.1 20231465
AT1G59610.1 KRH77654 AT5G42080.1 20231465
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH27552 Soybean cytosol 97.4 97.4
VIT_18s0089g00350.t01 Wine grape cytosol 85.57 84.75
GSMUA_Achr1P18350_001 Banana cytosol 78.2 80.65
KRH51295 Soybean endoplasmic reticulum 79.83 80.53
KRH01870 Soybean endoplasmic reticulum 79.72 80.42
CDX94910 Canola cytosol 41.32 80.21
CDY31035 Canola cytosol 54.45 80.19
VIT_15s0107g00170.t01 Wine grape cytosol 20.28 79.57
GSMUA_Achr7P05530_001 Banana nucleus 79.18 79.26
CDY20643 Canola cytosol 54.34 79.15
AT1G10290.1 Thale cress cytosol 78.09 78.77
CDY45889 Canola cytosol 78.31 78.48
GSMUA_Achr4P20040_001 Banana cytosol 78.2 78.45
AT1G59610.1 Thale cress cytosol 78.2 78.37
Bra031707.1-P Field mustard cytosol 77.77 78.36
CDY34897 Canola cytosol 77.77 78.36
CDY04455 Canola cytosol 77.87 78.21
CDX93442 Canola cytosol 77.11 78.05
Bra018449.1-P Field mustard cytosol 76.57 77.33
GSMUA_Achr3P01090_001 Banana nucleus 76.79 77.12
CDY27283 Canola cytosol 63.45 76.67
Bra017901.1-P Field mustard cytosol 77.98 76.08
CDX94909 Canola mitochondrion 59.98 76.07
EER88160 Sorghum cytosol, endoplasmic reticulum, nucleus 75.16 75.9
Bra019950.1-P Field mustard cytosol 77.11 75.72
Zm00001d037279_P005 Maize plasma membrane 74.84 75.58
TraesCS7D01G200900.1 Wheat golgi, unclear 73.54 75.08
Zm00001d044757_P006 Maize cytosol, nucleus, plasma membrane 74.3 75.03
TraesCS7A01G198100.1 Wheat cytosol, nucleus, plasma membrane 73.21 74.75
TraesCS7B01G104500.1 Wheat golgi, unclear 72.99 74.53
EES05560 Sorghum nucleus 74.4 74.48
CDY44550 Canola cytosol 77.87 74.48
HORVU7Hr1G040670.2 Barley cytosol, nucleus, plasma membrane 72.67 74.28
Os06t0247800-01 Rice plasma membrane 73.32 74.2
Zm00001d017979_P002 Maize extracellular, mitochondrion 74.08 74.16
TraesCS6D01G291700.1 Wheat nucleus 72.34 73.86
Os02t0738900-01 Rice plasma membrane 73.75 73.67
TraesCS6A01G312300.3 Wheat nucleus 72.67 73.63
Bra035433.1-P Field mustard cytosol 77.77 71.63
VIT_19s0015g02240.t01 Wine grape golgi, mitochondrion, plasma membrane 20.39 70.94
Os08t0425100-01 Rice plasma membrane 58.24 70.1
HORVU6Hr1G077000.1 Barley cytosol, mitochondrion, nucleus 72.99 69.31
KXG25176 Sorghum cytosol 56.29 69.02
TraesCS6B01G342500.2 Wheat cytosol 69.09 69.01
Zm00001d032256_P001 Maize cytosol 59.87 59.35
Zm00001d051815_P002 Maize cytosol 31.67 53.19
KRH46533 Soybean cytosol, endoplasmic reticulum, nucleus 20.61 30.84
KRH41722 Soybean endoplasmic reticulum, nucleus 20.17 30.15
KRH60421 Soybean endoplasmic reticulum 20.17 30.15
KRH48908 Soybean cytosol, nucleus 20.07 29.94
KRH66384 Soybean cytosol, endoplasmic reticulum 19.74 29.45
KRH49665 Soybean endoplasmic reticulum 19.63 29.29
KRH70357 Soybean endoplasmic reticulum, nucleus 19.63 29.29
KRH47905 Soybean cytosol, endoplasmic reticulum 19.09 28.9
KRH41321 Soybean endoplasmic reticulum, nucleus 19.09 28.85
KRH04285 Soybean cytosol 18.98 28.59
KRH60047 Soybean endoplasmic reticulum 18.87 28.52
KRH77654 Soybean endoplasmic reticulum 18.66 28.2
KRH27831 Soybean cytosol, endoplasmic reticulum, nucleus 18.44 27.87
KRH06461 Soybean cytosol 14.86 26.4
KRH49844 Soybean plastid 17.46 19.83
KRH10618 Soybean plastid 17.46 19.56
KRH42074 Soybean endoplasmic reticulum, nucleus 17.25 19.53
KRH21736 Soybean nucleus 17.35 19.37
KRH62781 Soybean nucleus 16.92 19.09
KRH42928 Soybean cytosol 11.82 18.2
KRH59040 Soybean cytosol 12.36 16.89
KRH11082 Soybean cytosol 2.6 16.44
KRH21190 Soybean cytosol 11.5 15.94
KRH21193 Soybean cytosol 8.46 15.73
KRH42202 Soybean nucleus 11.93 14.65
KRH55251 Soybean plastid 11.93 13.84
KRH26094 Soybean plastid 11.82 13.56
KRH58326 Soybean plasma membrane 5.64 10.42
HORVU4Hr1G074040.2 Barley nucleus 2.49 8.98
HORVU4Hr1G073960.12 Barley cytosol 3.8 8.77
HORVU5Hr1G092990.14 Barley cytosol 2.49 8.68
Protein Annotations
Gene3D:1.20.120.1240EntrezGene:100778966Gene3D:2.30.29.30MapMan:22.1.7.2Gene3D:3.40.50.300EMBL:ACUP02005375
ncoils:CoilInterPro:Dynamin_GTPaseInterPro:Dynamin_GTPase_CSInterPro:Dynamin_SFInterPro:Dynamin_centralInterPro:GED
InterPro:GED_domEnsemblPlantsGene:GLYMA_09G002100GO:GO:0000166GO:GO:0000266GO:GO:0003674GO:GO:0003824
GO:GO:0003924GO:GO:0005488GO:GO:0005515GO:GO:0005525GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0008017GO:GO:0008150GO:GO:0009987GO:GO:0016043
GO:GO:0016787InterPro:G_DYNAMIN_domUniProt:I1KZR0InterPro:IPR001849InterPro:IPR011993InterPro:IPR020850
InterPro:IPR030381EnsemblPlants:KRH36411ProteinID:KRH36411ProteinID:KRH36411.1InterPro:P-loop_NTPasePFAM:PF00169
PFAM:PF00350PFAM:PF01031PFAM:PF02212InterPro:PH-like_dom_sfInterPro:PH_domainPRINTS:PR00195
ScanProsite:PS00410PFscan:PS50003PFscan:PS51388PFscan:PS51718PANTHER:PTHR11566PANTHER:PTHR11566:SF57
SMART:SM00053SMART:SM00233SUPFAM:SSF50729SUPFAM:SSF52540UniParc:UPI0002338320SEG:seg
Description
hypothetical protein
Coordinates
chr9:+:152632..171502
Molecular Weight (calculated)
100128.0 Da
IEP (calculated)
9.619
GRAVY (calculated)
-0.509
Length
922 amino acids
Sequence
(BLAST)
001: MAAIEDLSEL ADSMRQAAAL LADEDVDESS TNSRRPSTFL NVVALGNVGA GKSAVLNSLI GHPVLPTGEN GATRAPICID LLRDTSLSSK SIILQIDNKS
101: QQVSASALRR SLQDRLSKSS TGKGRDQIYL KLRTSTAPPL KLVDLPGLDQ RIMDESLVSE YAEHNDAILL VIVPAVQAPE IASSRALKYA KEYDGEGTRT
201: IGIISKIDQA ASDQKALAAV QALLLNQGPA KTSDIPWVAL IGQSVSIATA QSGSAGSENS LETAWRAESE SLKSILTGAP PSKLGRIALV DALAHQIQNR
301: MKLRLPNLLS GLQGKSQIVQ DELARLGESM VTTSEGTRAI ALELCREFED KFLQHITTGE GSGWKIVSCF EGRFPDRMKQ LPLDRHFDIN NVKRIVLEAD
401: GYQPYLISPE KGLRSLIKGV LELAKEPSRL CVDEVHRVLI DIVSSAANAT PGLGRYPPFK REVVAIATSA LEGFKNESKK MVVALVDMER AFVPPQHFIR
501: LVQRRMERQR REEELKGRSS KKGQDAEQSI LNRASSPQTG GSMKSMKEDK KEKEKDKSGP AEKEGQESSS LKTAGAEGEI TAGFLLKKSA KTNGWSRRWF
601: VLNEKTGKLG YTKKQEEKHF RGVITLEECN IEEVADEEDP PSKSSKDKKS NGPDSGKVNL LFKITSRVPY KTVLKAHSAV VLKAESAADK VEWIKKISQV
701: IQAKGGQIRT SDGGPTMRHS LSDGSLDTMA RRPADPEEEL RWMSQEVRGY VEAVLNSLAA NVPKAVVLCQ VEKAKEDMLN QLYSSVSAQS TAKIEELLLE
801: DQNVKRRRDR IQKQSSLLSK LTRQLSIHDT RAAAASGWSN GSAESSPRSS SGPGDDWRSA FDAAANGPVS RSGSSRSGSN GHSRHSSDAA QNGDVNSGSN
901: SSSRRTPNRL PPAPPGSSGY KY
Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)
001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY
Arabidopsis Description
DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.