Factsheet for Os06t0247800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

plasma membrane: 18260611
plasma membrane: 19502382
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0681100-01
Os02t0738900-01	plasma membrane
Os03t0713100-01
Os05t0556100-01
Os06t0247800-01	plasma membrane
Os08t0425100-01	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	Os02t0738900-01	AT1G10290.1	25462567
AT1G10290.1	Os06t0247800-01	AT1G10290.1	25462567
AT1G10290.1	Os08t0425100-01	AT1G10290.1	25462567
AT1G10290.1	Os02t0738900-01	AT1G59610.1	25462567
AT1G10290.1	Os06t0247800-01	AT1G59610.1	25462567
AT1G10290.1	Os08t0425100-01	AT1G59610.1	25462567
AT1G10290.1	Os02t0738900-01	AT1G59610.1	25462567
AT1G10290.1	Os06t0247800-01	AT1G59610.1	25462567
AT1G10290.1	Os08t0425100-01	AT1G59610.1	25462567
AT1G59610.1	Os03t0713100-01	AT1G14830.1	21798944
AT1G59610.1	Os02t0738900-01	AT1G59610.1	25462567
AT1G59610.1	Os06t0247800-01	AT1G59610.1	25462567
AT1G59610.1	Os08t0425100-01	AT1G59610.1	25462567
AT1G59610.1	Os01t0681100-01	AT5G42080.1	20231465
AT1G59610.1	Os05t0556100-01	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	90.56	90.36
Zm00001d037279_P005	Maize	plasma membrane	90.45	90.25
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	89.35	89.16
TraesCS7B01G104500.1	Wheat	golgi, unclear	86.17	86.93
TraesCS7D01G200900.1	Wheat	golgi, unclear	86.06	86.82
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	85.95	86.71
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	85.84	86.7
Os02t0738900-01	Rice	plasma membrane	84.96	83.86
CDX94910	Canola	cytosol	39.74	76.21
CDY31035	Canola	cytosol	52.36	76.2
GSMUA_Achr7P05530_001	Banana	nucleus	76.18	75.35
GSMUA_Achr4P20040_001	Banana	cytosol	75.96	75.3
CDY20643	Canola	cytosol	52.25	75.2
GSMUA_Achr1P18350_001	Banana	cytosol	73.55	74.94
VIT_18s0089g00350.t01	Wine grape	cytosol	76.29	74.65
KRH36411	Soybean	endoplasmic reticulum, nucleus	74.2	73.32
GSMUA_Achr3P01090_001	Banana	nucleus	73.66	73.09
KRH27552	Soybean	cytosol	73.87	72.99
AT1G10290.1	Thale cress	cytosol	72.67	72.43
Bra018449.1-P	Field mustard	cytosol	72.45	72.29
CDX93442	Canola	cytosol	72.23	72.23
CDY45889	Canola	cytosol	72.78	72.07
CDY34897	Canola	cytosol	72.23	71.91
Bra031707.1-P	Field mustard	cytosol	72.23	71.91
AT1G59610.1	Thale cress	cytosol	72.56	71.85
CDY04455	Canola	cytosol	72.12	71.57
CDY27283	Canola	cytosol	59.5	71.04
Os08t0425100-01	Rice	plasma membrane	59.28	70.5
CDX94909	Canola	mitochondrion	56.09	70.29
Bra019950.1-P	Field mustard	cytosol	72.23	70.07
Bra017901.1-P	Field mustard	cytosol	72.34	69.74
CDY44550	Canola	cytosol	72.67	68.67
VIT_15s0107g00170.t01	Wine grape	cytosol	17.45	67.66
Bra035433.1-P	Field mustard	cytosol	72.56	66.03
VIT_00s0267g00020.t01	Wine grape	cytosol	10.54	61.15
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	17.56	60.38
Os10t0567800-01	Rice	plasma membrane	19.65	28.96
Os09t0572900-01	Rice	cytosol, plasma membrane	19.54	28.43
Os03t0713100-01	Rice	plasma membrane	18.22	27.17
Os05t0556100-01	Rice	plasma membrane	18.11	27.09
Os01t0681100-01	Rice	cytosol, plasma membrane	4.5	22.28
Os01t0920400-01	Rice	nucleus, plastid	18.11	20.17
Os04t0381000-01	Rice	cytosol	17.78	19.95
Os03t0260000-01	Rice	cytosol	12.4	16.67
Os04t0129900-01	Rice	cytosol	12.29	16.37
Os12t0178700-01	Rice	cytosol	8.23	13.42
Os01t0748000-00	Rice	plastid	11.53	12.77

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	EntrezGene:4340644	EMBL:AK102187
ProteinID:BAD45672.1	ProteinID:BAF19199.1	ProteinID:BAS97038.1	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	ProteinID:EAZ36478.1	InterPro:GED	InterPro:GED_dom	GO:GO:0000166
GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR001849
InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381	EnsemblPlantsGene:Os06g0247800	EnsemblPlants:Os06t0247800-01	InterPro:P-loop_NTPase
PFAM:PF00169	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF134	UniProt:Q654U5	SMART:SM00053	SMART:SM00233	SMART:SM00302	SUPFAM:SSF50729
SUPFAM:SSF52540	UniParc:UPI000043A384	RefSeq:XP_015643697.1	SEG:seg	:	:

Description

dynamin-related protein 2ASimilar to Dynamin-like protein (Fragment). (Os06t0247800-01);Non-protein coding transcript. (Os06t0247800-02)

Coordinates

chr6:+:7661735..7669994

Molecular Weight (calculated)

99246.6 Da

IEP (calculated)

9.770

GRAVY (calculated)

-0.582

Length

911 amino acids

Sequence
(BLAST)

001: MEAVEELAQL SEAMRQAASL LADDDPSDDS APRRPSTFLN AVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIVVDL QRDPGLSSKS IVLQIDSKSQ
101: QVSASSLRHS LQDRLSKGAS SGSSRGRVEG INLKLRTSTA PPLKLVDLPG IDQRAVDDSM INEYAGHNDA ILLVVIPAMQ AADVASSRAL RLAKDIDADG
201: TRTVGVISKV DQAEGDAKTI ACVQALLSNK GPKNLPDIEW VALIGQSVAI ASAQAAGSEN SLETAWNAEA ETLRSILTGA PKSKLGRIAL VDTIAKQIRK
301: RMKVRLPNLL SGLQGKSQMV QDELARLGES MVQSAEGTRA VALELCREFE DKFLAHITSG EGSGWKVVAS FEGKFPERIK QLPLDRHFDL SNVKRIVLEA
401: DGYQPYLISP EKGLRSLIKI VLDMAKEPSR LCVEEVHRVL LDIVNASANA TPGLGRYPPF KREVIAIASN ALDSFKNDAK KMVVALVDME RAFVPPQHFI
501: RLVQRRMERQ RREDELKNRS SKKPQDADQP MGKRASSPQT GSEKDTKDKS AKDKDKDKSG QQDKDAKEGS SVQVAGSSGE ITAGYLLKKS AKTNGWSRRW
601: FVLNEKSGKL GYTKKQEERH FRGVITLEEC NLEEVEEEEP PKSLKDSKKA NGPEKGPSLV FKITNRVAYK TVLKAHSAVV LKAESTADKV EWVNKIRAVI
701: QSKGGSFKGP NTDGGSMRQS NSDGALDTMA RRPADPEEEL RWMSHEVRGY VEAVLNSLAA NVPKAIVLCQ VEKAKEDMLN QLYSSISGQS NAKIEELLQE
801: DHNAKRRREK YQKQSSLLSK LTRQLSVHDN RAASYANDIS EAESPRTPNR PGEDWRSAFD SASNGPSSGS ESRSRSADGR RGRYENGDVT SGANSGSRRT
901: PNRLPPAPPK Y

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.