Factsheet for Os08t0425100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0681100-01
Os02t0738900-01	plasma membrane
Os03t0713100-01
Os05t0556100-01
Os06t0247800-01	plasma membrane
Os08t0425100-01	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	Os02t0738900-01	AT1G10290.1	25462567
AT1G10290.1	Os06t0247800-01	AT1G10290.1	25462567
AT1G10290.1	Os08t0425100-01	AT1G10290.1	25462567
AT1G10290.1	Os02t0738900-01	AT1G59610.1	25462567
AT1G10290.1	Os06t0247800-01	AT1G59610.1	25462567
AT1G10290.1	Os08t0425100-01	AT1G59610.1	25462567
AT1G10290.1	Os02t0738900-01	AT1G59610.1	25462567
AT1G10290.1	Os06t0247800-01	AT1G59610.1	25462567
AT1G10290.1	Os08t0425100-01	AT1G59610.1	25462567
AT1G59610.1	Os03t0713100-01	AT1G14830.1	21798944
AT1G59610.1	Os02t0738900-01	AT1G59610.1	25462567
AT1G59610.1	Os06t0247800-01	AT1G59610.1	25462567
AT1G59610.1	Os08t0425100-01	AT1G59610.1	25462567
AT1G59610.1	Os01t0681100-01	AT5G42080.1	20231465
AT1G59610.1	Os05t0556100-01	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25176	Sorghum	cytosol	79.11	80.59
CDX94910	Canola	cytosol	43.34	69.89
CDY31035	Canola	cytosol	55.61	68.05
CDY20643	Canola	cytosol	55.48	67.14
VIT_15s0107g00170.t01	Wine grape	cytosol	20.37	66.38
VIT_00s0267g00020.t01	Wine grape	cytosol	12.53	61.15
GSMUA_Achr1P18350_001	Banana	cytosol	71.15	60.96
Zm00001d032256_P001	Maize	cytosol	73.63	60.65
GSMUA_Achr7P05530_001	Banana	nucleus	71.8	59.72
GSMUA_Achr4P20040_001	Banana	cytosol	71.28	59.41
Os06t0247800-01	Rice	plasma membrane	70.5	59.28
VIT_18s0089g00350.t01	Wine grape	cytosol	71.93	59.18
KRH27552	Soybean	cytosol	70.5	58.57
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	20.23	58.49
KRH36411	Soybean	endoplasmic reticulum, nucleus	70.1	58.24
Os02t0738900-01	Rice	plasma membrane	69.84	57.96
GSMUA_Achr3P01090_001	Banana	nucleus	68.93	57.52
AT1G10290.1	Thale cress	cytosol	68.15	57.11
CDX93442	Canola	cytosol	67.89	57.08
AT1G59610.1	Thale cress	cytosol	68.28	56.85
CDY04455	Canola	cytosol	68.02	56.75
CDY45889	Canola	cytosol	68.15	56.74
CDY34897	Canola	cytosol	66.84	55.96
Bra031707.1-P	Field mustard	cytosol	66.84	55.96
Bra018449.1-P	Field mustard	cytosol	66.45	55.75
Bra019950.1-P	Field mustard	cytosol	67.89	55.38
CDY27283	Canola	cytosol	55.09	55.31
Bra017901.1-P	Field mustard	cytosol	68.15	55.24
CDY44550	Canola	cytosol	68.15	54.15
CDX94909	Canola	mitochondrion	50.39	53.09
Bra035433.1-P	Field mustard	cytosol	68.02	52.05
Os05t0556100-01	Rice	plasma membrane	20.5	25.78
Os10t0567800-01	Rice	plasma membrane	20.37	25.24
Os03t0713100-01	Rice	plasma membrane	19.32	24.22
Os09t0572900-01	Rice	cytosol, plasma membrane	19.71	24.12
Os01t0681100-01	Rice	cytosol, plasma membrane	5.35	22.28
Os01t0920400-01	Rice	nucleus, plastid	17.36	16.26
Os04t0381000-01	Rice	cytosol	16.97	16.01
Os03t0260000-01	Rice	cytosol	13.58	15.34
Os04t0129900-01	Rice	cytosol	12.53	14.04
Os12t0178700-01	Rice	cytosol	9.4	12.88
Os01t0748000-00	Rice	plastid	12.53	11.68

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	ProteinID:BAF23750.1	ProteinID:BAT05496.1
ProteinID:BAT05497.1	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central
GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom
InterPro:IPR001849	InterPro:IPR011993	InterPro:IPR030381	EnsemblPlantsGene:Os08g0425100	EnsemblPlants:Os08t0425100-01	InterPro:P-loop_NTPase
PFAM:PF00169	PFAM:PF00350	PFAM:PF01031	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00195
ScanProsite:PS00410	PFscan:PS50003	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF136	UniProt:Q0J5L5
SMART:SM00053	SMART:SM00233	SUPFAM:SSF50729	SUPFAM:SSF52540	UniParc:UPI0000DD9523	SEG:seg

Description

dynamin-related protein 2CDynamin family protein. (Os08t0425100-01);Similar to DRP. (Os08t0425100-02)

Coordinates

chr8:+:20408221..20418654

Molecular Weight (calculated)

83935.4 Da

IEP (calculated)

9.762

GRAVY (calculated)

-0.289

Length

766 amino acids

Sequence
(BLAST)

001: MEAIEELSEL ADATRQASAL LADDDPSEQP AQRRGGSSFL TVVALGNIGA GKSAVLNGLI GHPVLPTGEN GATRAPICVD LQRDASLSSK SIMLQIDSKS
101: QQVSASSLRH SLQDRLTKAG SFGKGRSEEI NVKLCTSTAP PLKLIDLPGI DQRSMDESMI GNYAARNDAI LLVIVPALQA PDVASSRALR IARELDSEGS
201: RTIGVVSKVD QVAEDQRALL AVQALLVNQG PRTAADIQWI ATIGNSVPIA SVQSGVGSES SPETIWKVEV ESLKSILLGS PQSKLGREAL VDSLAKQIRT
301: RIKVRLPNLL NGLQGKSQII QEELAKLGEQ MVQSSEGTRV IALGLCREFE DKFLQHITGV EGGGWKVVAS FEGKFPTRIK QLPLDKHFDM KNVKRIVLEA
401: DGYQPYLISP EKGLRSLIKG LLELAKEPSI LLVDEVHRVL LDIVSATANA TPGLGRYPLF KREVIAIGSA ALDGFKDEAK KMVIALVDME RAFVPPQHFI
501: RLLQRRMERQ RHEDELKSRS TKKVSDAEPS KATSPQTQTK EGSNLQVLGP AGEITAGFLF KKRAKANDWS NRWFVLNERS GKLGYTKKQE ERHFRGVINL
601: EECNLEEVLD EEDPTRSLKD PKKPNVPDIG TPGLIFKITH KVAYKNVLKA HKAIILKAES MAEKTEWVTK IRSIVDQKGA SATSGLPMKQ SHSDGSLMST
701: SKKDGSLDTM LRKPVDPEEE LKWISQEVRG YVEAVLSSLA ANVPKLWFFA KLRRQRKACL ISSILR

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.